AMCG00009078


Basic Information

Item Value
gene id AMCG00009078
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24634390 ~ 24647480 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009078
GTAGGATACATAGAATGTCCTTCTGGACCATTGGCAAACTGCTGGATAAGCAACATGCTGCCGGTGCGTGAACACATGGATTGATTATTAAAAACTGTGAGTGACTGGGTGAACATTGGAACACTGGTGTCTTTCTACTATGGAGAGAGGACTGTTCTGTTGGAGAAATGGAATCTGATAAGCAAATCACAGGCACCTTGCTTCTTGCTGTCTTCACTGCAACTCTCGGGTCCCTGCAGTATGGCTACAGCATCGGAGTCATCAATGCGCCGCAAAAGGTCATAGAAAGGCATTATGAACGGACTCTGGGTTTGCTGCATAATGACTCCCTGGCTGTCAATGGCAGTGACGTGATGGTGTCACATTCCTCTGTCTTGATGTACTGGTCTTTATCAGTCTCAATCTTCTCCATTGGAGGAGTGTTCTCCTCCTTCCTGGTGGGGTGGGTTGGAGAAAAGCGAGGGAGAGTAAAGGGCATGCTAGCTGTGAATATCCTAGCTGTGACTGCAGGTCTTCTGATGGGACTGTCCAAAATGGGACCGGCGCATATCATGGTCATTGCAGGAAGAGCATTGATGGGGTTTTACTGTGGACTATCGTCTGGGCTTGTTCCGATGTACATTGGAGAGATCGCGCCCACAGCATATCGAGGAGCCTTTGGGACCTTACACCAGCTGGCTATTGTCACCGGAATATTGCTGAGCCAGGTCATTGGTCTAGAATTCCTGCTGGGAAATGATACAATGTGGCCACTATTACTGGGCTTGTCAGGAGCACCAGCTGTTCTCCAGAGTTTTCTGCTGCCCCTTTGCCCAGAGAGCCCCCGCTATCTCTACATCAATCTGGGCAAGAAAGAGGAGACTCAAAATTGTCTGAAGCGGTTAAGAGGAAAATGTGACATTGAAAAAGATATGGCTGagatgaaaaaggaaaagcaagatTCTATAAAGGAGGACAAGATATCCATCCTGAAGCTCCTTCGCTCTACTGATTATCGACAACCCCTCTTTGTGGCTCTCATGATGCATCTCTCTCAGCAGTTCTCTGGCATCAATGCAATTTTTTACTACTCCACTAGTATTTTTGAAACCGCTGGCTTCACCCAACCCGTTTATGCTACAATCGGAGTAGGGGTCATCAACACCATTTTCACCATGCTTTCAgtggtGCTGGTCGACAAAGCTGGTAGACGCACCCTATGTTTGATAGGATTAGCAGGAATGTGCGTCTGTGCAATAATCATGACTGTTGGACTGGTGTACTTGGACCAGTTTGCTTGGATGAGCTATGTCAGCATGGCAGGCATCTTcttgtttgtatgtttctttGAGATTGGCCCTGGCCCTATCCCATGGTTCTTTGTGGCAGAGCTCTTCAGCCAGGGCCCTCGACCATCTGCCATTGCTTTAGCTGGCTGCTGCAACTGGACCAGCAACTTCCTCATTGGGATGTGTTTTCCATATATACAGGGTTTTTGTGGAAGTTACGTCTTCATCATCTTCGCTGTCCTGCTGTTCTTCTTCACCATGTTTGCCTACTTCCGAGTGCCTGAAACAAAGGGAAAGACTTTTGAGGAAATCTCAGCAGAATTCTATCGCCGACGTCATGGCACACTCCCCAGCCCTAAAGCTGCAACTGAGATGTTATATCTGGGGACATCGACAGATGCCTGAGAGTCTCCGAACAAGAGAACGCAAGAGCTGCCATTTTGGAAGTTATATACCtgtcccattttttttttttatatatatccaccctgaagaaaaaaaaaaaaaaaaaactaattttgagAGATGTCTGTTACACTACAGGACTTTCAGTATTTTGAACACTACGGAAACacataaaatgcaaacacaaaattTAATGGCATTTCTGTGCTAAAAACATTCCGTTCTGTGACTATTGAATTAAACTAATACTATGCAATGGCTTTGATATCAACCACATTGTAAAGAGAAACTCTGGGCTGAGCTCAATTGctctgttttaaatatatgtatattgacaTTTCTTAAGATCTAAGTGCTTTTCCAGGAGTTACTTTCTTTGCATGCATATAAAACATTCAATCAGACATTGCGCCCTTGAcatccaaacacaaacacagctgtcaCTGGCTGTAAAGTTCAGTAATAGGCTGGGTtgtgagtgtatatgagatTTTGTTCTCGTTTGACTGATCTGGTTATAGAAACAGAATCTGTCTATTGTTCAGGGAGTCAAATAGAGATCAAAGTATAGAGAAGTTTCTGGGACATATAGGAAATGGAACATGAATGGACTTATCTCTGGTTTCTTAGGCacttttatttctaatatatgaataaatagagTCAAAGTAATTGGGAAAGGAAAAGACTGTTAACAATGTAACAGCTGCTGTTGCAATTTTATGAAACACTGTCCttgcatattttcaaatgagGCAGCACTTCTTTCCTTTTTGTgaacactgtttaaaaaaagtgatCTAATGCCAGCTACATTTTTAGTTTCCATGTAGTTTGCAAGATTAACTTTGATTTGTTATACCTTGTTTGTATGGTGAATTGTGTTGTTTGTCATTGAGAGTATGCATGAAAGCATAACATTACTGTATGTTAAATCCAACAGCTTTTGCTACATGAATTACTGATAAGAAAAATGTCCTATAGGAACGTCATGCAGAAATCTTTTGCAAACTCCTTCTAAACTATTTAAAGGATCCTATAAAACTACTTGCAGTGCTTATGACTGGATGTTATACAGCTGAGACTAAATGGGAGAGAAATAGAATCTGCCTTCCACACACCTTTGAGATTTGACTGCATTATTCAACTGTTCTTCAGCAGCTAACTAGAAGACCTTTATACAGATATCTGTTAATTTTTAACTTCtatgaaacacaaacatgtttgttaAAAGCAAACCCTAATTCCCTTTCTAAAAGCTCGACAGATTGTAATTTATGTTAATGGAGCATGATAAttgaattttacatttcactttgtCGTGTTTTACTCTACCTCTGCTAAGTTactatattattacatttcacaattgTGATTTGATGACTCAGTGGAAACTCTGAAGATAAATGATACCTTGTGAAAACAACACTTGCCTGAGCTTGGCG

Function

GO:

id name namespace
GO:0001889 liver development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0055056 D-glucose transmembrane transporter activity molecular_function

KEGG:

id description
K07593 SLC2A2, GLUT2; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009078 True 3118 mRNA 0.41 11 24634390 24647480

Neighbor

gene id symbol gene type direction distance location
AMCG00009076 tnik,LOC103024681,LOC107721871,LOC107663657 coding upstream 2758 24566439 ~ 24631632 (+)
AMCG00009079 NA coding upstream 135901 24461938 ~ 24498489 (+)
AMCG00009072 ghsra,LOC107732507,LOC107680230,LOC107550603,LOC107586567,LOC107688542 coding upstream 412423 24218804 ~ 24221967 (+)
AMCG00009070 NA coding upstream 417543 24212416 ~ 24216847 (+)
AMCG00009069 NA coding upstream 427869 24200357 ~ 24206521 (+)
AMCG00009077 eif5a,LOC107590245,LOC107685442,LOC107586748 coding downstream 2234 24649714 ~ 24654285 (+)
AMCG00009080 rpl22l1,rl22l,LOC107721850 coding downstream 16823 24664303 ~ 24666228 (+)
AMCG00009081 LOC108442332,LOC107680258,LOC107732514,LOC107550597,LOC107688500,LOC107584921,LOC107722625 coding downstream 114536 24762016 ~ 24780751 (+)
AMCG00009084 prkci,LOC106600503 coding downstream 170738 24818218 ~ 24844217 (+)
AMCG00009087 NA coding downstream 210533 24858013 ~ 24859230 (+)
G54356 NA non-coding upstream 355829 24277905 ~ 24278561 (+)
G54328 NA non-coding upstream 468329 24165790 ~ 24166061 (+)
G54264 NA non-coding upstream 740103 23890127 ~ 23894287 (+)
G54238 NA non-coding upstream 969738 23664157 ~ 23664652 (+)
G54237 NA non-coding upstream 970296 23663393 ~ 23664094 (+)
G54430 NA non-coding downstream 136030 24783510 ~ 24787085 (+)
G54547 NA non-coding downstream 524521 25172001 ~ 25172864 (+)
G54563 NA non-coding downstream 660780 25308260 ~ 25308495 (+)
G54566 NA non-coding downstream 699798 25347278 ~ 25348983 (+)
G54580 NA non-coding downstream 757190 25404670 ~ 25413822 (+)
G54263 NA other upstream 658484 23883317 ~ 23975906 (+)
G53917 NA other upstream 3340489 21292241 ~ 21293901 (+)
G53915 NA other upstream 3359036 21274611 ~ 21275354 (+)
G53911 NA other upstream 3465815 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 4238034 20376795 ~ 20396356 (+)
AMCG00009085 NA other downstream 165138 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 250636 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 842231 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 937402 25584882 ~ 25587615 (+)
AMCG00009129 NA other downstream 2146057 26793537 ~ 26796768 (+)

Expression


Co-expression Network