AMCG00009082


Basic Information

Item Value
gene id AMCG00009082
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24783510 ~ 24787089 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009082
GATGCTTACATGGACTTCAATGGTTTGCACATGATGGGATTATTTCTACACAGCACTCCAAAGATCGTCTAGAAGTtctggattatttattttgtagcatATTGTGTATACATTTGGTATTTGCCAGTTATCATCAGTCCTATTATTGTTCCATATTTCggtcttttttctgttttgcttgtCGTACCTCTTGCTGTGCCATGGCCAACTCCTGCCTGCAGCTCTGTGGCTTTATGATGAGTTGCTTTGGCTGGATCGGGATCATCGTTGCTACAGCCACCAACGAGTGGGTTTTCACCTGCAAGTATGGCATGGCTACCTGTAAGAAGATGGATGAATTGGGTGCCAAAGGCCTGTGGGCGGATTGTGTCGTTTCTACTGTGCTTTACCATTGTATTGCCCTGAATCAGATCCTGTCTTTACCAGCCTACATCCAGACTACCCGTGCCCTGATGATCACAGCCTCCATCCTTGGGCTGCCTGCGGTGGCACTCGTGCTGATGGCCATGCCATGTATCAACCTGGGGAATGAGCCCGAGTCAGCCAAGCACAAGCGCGCCGTGCTGGGAGGGGTCCTCATCTTGCTGATGGCACTGTGTGGAATAGTGTCAACGGTGTGGTTCCCAATCGGAGCGCACCATGAGACAGGGCTGATGTCTTTTGGCTTCTCTCTGTACGTGGGCTGGGTGGGCTCGGCCTTCTGTCTTCTCGGCGGATCAATGATCAGCTGTTGTTCGGGCGATTCCACACAGTACACCGAGAACCGCTTCTATTACTCTAAACAGGGATCAACCAACCCCGCCCCTTCTGCCAACCATGCCAAAAGTGCTCACGTGTGAGACTGGATTACAACAATCGGACTAACACAACCAAAAGAGGACCTTCCACCGGGCAGTTTCACTCCAGCTTCAATTATGAGGGCATCCCACTGTGGAATAATggatttcattgttttacatataACCTGTGCAGTAAGTCATTTGATGTTTTCCCCTTCAAAGATCGATGGAATGCAACAGGCCAGCTGCCAGGTCTCTGAGTGACAGAAGATTCATCCAGATGTTTTGCAAGCACAAACCCCAACGTACAGGTCATTAAAAGCAGGCACATCTGTTGTATGAAGTGATAAAGGGATTCAATAATCCAAGGACTCTTCCTAAGAAATGTGCTTTAGAACTTCTTCCATAAAGACAAAGGTTCATAATACTAAATAGCTTattatgttttgtctttgttgtaATTGTCAATGGTCATTAATGTGTTGCAGTATAATGTGAATTCCTGTAAACCTCAAAAAGGTATCAAAGGTACCAAGACATGAAACTTTAATTTCTGATCGTCTGCAGAAAATGGTGGTTCCTGTACATAAAAACTGATTGATCATTTACGGTAATGTATAAATAGTCTAGGCATGTACAGTGtttaaagcaacacaatgtGATGGGTAGCAATACATGACACAAGAATAGTAGACTAATTTACCACTGCAAATCCCACATACTTACAGAGCTATTTCCATTAAAAGAACAAACTAATCTTTATAACATTCCACGAGACTTTTCTAATAATAACACATGAAACACTGCCTTGATTATTTATTACAGCATTGGTATCTTTTATTGTCTGAATTTCTAttaataaaagttttttttttctctaaactgCTCTTTGCATTAATTTTGTGAATCTAATGGGTGTTTAACTTTAAAACCTCTATTCCATCCTCTATACTTTGTTTACATATTGTGCCAAATAAGAGAATATTGGTGcaaataatgtgtaaataacatatatatatatgttatgctatatatatcaacatcatcatcagcagcttatatcaagatgtttccacttgcttggATCTACAGCTTTtcc

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009082 True 1878 mRNA 0.42 3 24783510 24787089

Neighbor

gene id symbol gene type direction distance location
AMCG00009075 NA coding downstream 353761 24395954 ~ 24429749 (-)
AMCG00009073 fndc3b,LOC105908526,LOC106591582 coding downstream 465934 24313154 ~ 24317576 (-)
AMCG00009074 NA coding downstream 489882 24265497 ~ 24293628 (-)
AMCG00009071 NA coding downstream 541077 24235545 ~ 24242433 (-)
AMCG00009068 NA coding downstream 671931 24107205 ~ 24111579 (-)
AMCG00009086 NA coding upstream 5313 24792402 ~ 24805280 (-)
AMCG00009093 NA coding upstream 102842 24889931 ~ 24895400 (-)
AMCG00009090 sec62,LOC107684396,LOC107738178,LOC107558802 coding upstream 134138 24921227 ~ 24933161 (-)
AMCG00009091 NA coding upstream 147132 24934221 ~ 24942274 (-)
AMCG00009092 NA coding upstream 173504 24960593 ~ 24961927 (-)
G54408 NA non-coding downstream 72737 24627839 ~ 24710773 (-)
G54415 NA non-coding downstream 117276 24664305 ~ 24666234 (-)
G54363 NA non-coding downstream 504974 24277883 ~ 24278536 (-)
G54273 NA non-coding downstream 963720 23817062 ~ 23819790 (-)
G54179 NA non-coding downstream 1480825 23302454 ~ 23302685 (-)
G54447 NA non-coding upstream 1306 24788395 ~ 24791263 (-)
G54450 NA non-coding upstream 26464 24813553 ~ 24847829 (-)
G54466 NA non-coding upstream 94950 24882039 ~ 24884725 (-)
G54548 NA non-coding upstream 383142 25170231 ~ 25172840 (-)
G54561 NA non-coding upstream 496588 25283677 ~ 25284103 (-)
AMCG00009060 hltf other downstream 920475 23825229 ~ 23863035 (-)
G54003 LOC107575789 other downstream 2599945 22183088 ~ 22183565 (-)
G53809 NA other downstream 4511696 20179799 ~ 20271814 (-)
AMCG00009027 NA other downstream 4721331 20061524 ~ 20062179 (-)
AMCG00009029 NA other downstream 4813234 19961027 ~ 19970276 (-)
G54544 NA other upstream 366177 25153266 ~ 25156338 (-)
AMCG00009100 NA other upstream 386588 25173677 ~ 25176378 (-)
AMCG00009106 NA other upstream 673517 25460606 ~ 25462690 (-)
AMCG00009105 NA other upstream 742740 25529829 ~ 25531566 (-)
AMCG00009121 NA other upstream 1735544 26522633 ~ 26532410 (-)

Expression


Co-expression Network