AMCG00009108


Basic Information

Item Value
gene id AMCG00009108
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25584882 ~ 25587615 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009108
CTCGCTGAGGGTCTTGCTTGTCATAACAGTTTCTGGTCACCGCTgaggataaaaaaagaaacaggtcCTCAGAGGAAATGAAGTACACATCTGCTGCCTTTCTGTTTGTCACTGCATGGGCTGTATGTACCTTTGCATATAATGGGCCTCCTGCTAGCTGCTGCCTGGTTGTATCAGACACAAAACTGAAGCTTGACAGAATTGTGAATTACACTCTACAGAAAAAAGGAGTTTGCCCGGTGGATGCAGTCGTCTTCCACACAATTCGAGGGAAAAAAGTCTGCTCTGATCCCGAAAAAGACTGGgtaaaaaatgcaattgaaaagGTTGACCAGAGGGAAGTGGGGTCAAAGAATATCAACATACCcagaagacagaaaaaaggaagaaaattgAGGAAAGGCACTAACCGGAAacaaaggaaaccaaaaaacagaCAGTAGCAAATGTGATTGTAGGACATGCTATGCTTTCTCTTGGGCAAACCTTTCTATAACTTTGATAGTTCTATTTTGTctggatgtattttattttattttatttattgcaaatcacaatctaatttaatattgttgtccgagaaagtaaaacattatGGTCACATGTTATAAAAACTTGCAAGAGATAAAAGATTGAATTAattcatcaaaatgtaatgaatagtTAGGAAAATGTGATCATAAGGTAATTAATATGGATGTATTGTTGCTTCTCTCATTTGAATGTAATACTGTGGTAAAGGTTTTTAATTGAGCTGTGAAGTACTTGTGGTTTTAGTGCTGATGTATGTAACAGGCTAATAAAACTGACCACAAGATTTGAaccacaaattacatttattcttaACTCAATAAGAAAATCAGCCTGACACTCAGTCCTGAACCATATATCCttaagaagaagagaagagatacatttatattacGGAGgaatttccattaaaatatcaTGCCTTCACAACAGCTGTTTGGTACACATTTTTGGCTGTATCTACATGCTGAAAGGCCAAATAATTTAAGATCCTGCAAAAGCCCAGAATCAAGTTAATGTCTTGGCAGTTGTGTATTTACCCACAGGCGATTGCAAAGGATGAAGGCATCTCCCTGATACTTAGGACTACAGAGTCATTGACTTCTTATTGATATGACTTTGCCAAACACttacacacaacaacaaaaaccatgGGACTGCAGGGGCCAATATTTTatggattattataattaaactaatatatttgtggctttatttagtttgtgtttctCAGTCATGATTTGTTGATTGTGATATAAAAGATTCCAGTAGGCGTGGCCTACAAAGTAAGTAGGGGAGAGATAACTTAAACTTGATTTGATCTATCAAGGGAGGCAGAAGACAGAAAGAGGCAAAGACTGCAGAATTAAGATTTACACCTAGGAGAAACTTTCTGTTGCCACTCAAAAAATCCTCAGGTAACCCTAAAAACCTGGAAATTATGTTAGATTTCCAATGTATTTTTGTGCAATGCTATTACTTTAgatttgtgtaataaaatacttaacaattaggaatatttaattattaaattgcatcccttttttctctttttcctcaTATAACTCTTTTGTCTTTCTTGCCTGTGCATATGACCATATATACTGTTTATGTTTGCTTATCTCTGACTACCAGTTCTGCTTGCATTGGaggataaataaattaaaaatactgctACACAAA
>TU68288
GTCTTGCTTGTCATAACAGTTTCTGGTCACCGCTgaggataaaaaaagaaacaggtcCTCAGAGGAAATGAAGTACACATCTGCTGCCTTTCTGTTTGTCACTGCATGGGCTGTATGTACCTTTGCATATAATGGGCCTCCTGCTAGCTGCTGCCTGGTTGTATCAGACACAAAACTGAAGCTTGACAGAATTGTGAATTACACTCTACAGAAAAAAGGAGTTTGCCCGGTGGATGCAGTCGTCTTCCACACAATTCGAGGGAAAAAAGTCTGCTCTGATCCCGAAAAAGACTGGgtaaaaaatgcaattgaaaagGTTGACCAGAGGGAAGTGGGGTCAAAGAATATCAACATACCcagaagacagaaaaaaggaagaaaattgAGGAAAGGCACTAACCGGAAacaaaggaaaccaaaaaacagaCAGTAGCAAATGTGATTGTAGGACATGCTATGCTTTCTCTTGGGCAAACCTTTCTATAACTTTGATAGTTCTATTTTGTctggatgtattttattttattttatttattgcaaatcacaatctaatttaatattgttgtccgagaaagtaaaacattatGGTCACATGTTATAAAAACTTGCAAGAGATAAAAGATTGAATTAattcatcaaaatgtaatgaatagtTAGGAAAATGTGATCATAAGGTAATTAATATGGATGTATTGTTGCTTCTCTCATTTGAATGTAATACTGTGGTAAAGGTTTTTAATTGAGCTGTGAAGTACTTGTGGTTTTAGTGCTGATGTATGTAACAGGCTAATAAAACTGACCACAAGATTTGAaccacaaattacatttattcttaACTCAATAAGAAAATCAGCCTGACACTCAGTCCTGAACCATATATCCttaagaagaagagaagagatacatttatattacGGAGgaatttccattaaaatatcaTGCCTTCACAACAGCTGTTTGGTACACATTTTTGGCTGTATCTACATGCTGAAAGGCCAAATAATTTAAGATCCTGCAAAAGCCCAGAATCAAGTTAATGTCTTGGCAGTTGTGTATTTACCCACAGGCGATTGCAAAGGATGAAGGCATCTCCCTGATACTTAGGACTACAGAGTCATTGACTTCTTATTGATATGACTTTGCCAAACACttacacacaacaacaaaaaccatgGGACTGCAGGGGCCAATATTTTatggattattataattaaactaatatatttgtggctttatttagtttgtgtttctCAGTCATGATTTGTTGATTGTGATATAAAAGATTCCAGTAGGCGTGGCCTACAAAGTAAGTAGGGGAGAGATAACTTAAACTTGATTTGATCTATCAAGGGAGGCAGAAGACAGAAAGAGGCAAAGACTGCAGAATTAAGATTTACACCTAGGAGAAACTTTCTGTTGCCACTCAAAAAATCCTCAGGTAACCCTAAAAACCTGGAAATTATGTTAGATTTCCAATGTATTTTTGTGCAATGCTATTACTTTAgatttgtgtaataaaatacttaacaattaggaatatttaattattaaattgcatcccttttttctctttttcctcaTATAACTCTTTTGTCTTTCTTGCCTGTGCATATGACCATATATACTGTTTATGTTTGCTTATCTCTGACTACCAGTTCTGCTTGCATTGGaggataaataaattaaaaatactgctAC

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009108 True 1713 mRNA 0.35 3 25584882 25587615
TU68288 False 1698 TUCP 0.35 3 25584892 25587610

Neighbor

gene id symbol gene type direction distance location
AMCG00009107 NA coding upstream 10318 25571328 ~ 25574564 (+)
AMCG00009096 NA coding upstream 427331 25151798 ~ 25157551 (+)
AMCG00009097 NA coding upstream 547204 25032102 ~ 25037678 (+)
AMCG00009089 NA coding upstream 626246 24950775 ~ 24958636 (+)
AMCG00009083 NA coding upstream 702940 24873573 ~ 24881942 (+)
AMCG00009111 LOC108428906,LOC107694655,LOC106600124,LOC107384117 coding downstream 36182 25623797 ~ 25639855 (+)
AMCG00009109 epha4b,LOC105890571,LOC108428906 coding downstream 79905 25667520 ~ 25674012 (+)
AMCG00009110 LOC103372263,LOC106600124,LOC108428906,LOC108239506,LOC102295545,LOC101472694,LOC103395911 coding downstream 105871 25693486 ~ 25716048 (+)
AMCG00009117 acvr1l,LOC107678695,LOC107602619,LOC108428902,LOC107749086 coding downstream 910237 26497852 ~ 26509639 (+)
AMCG00009115 NA coding downstream 934249 26521864 ~ 26528491 (+)
G54609 NA non-coding upstream 63568 25521019 ~ 25521314 (+)
G54608 NA non-coding upstream 66973 25516373 ~ 25517909 (+)
G54580 NA non-coding upstream 171060 25404670 ~ 25413822 (+)
G54566 NA non-coding upstream 235899 25347278 ~ 25348983 (+)
G54563 NA non-coding upstream 276387 25308260 ~ 25308495 (+)
G54705 NA non-coding downstream 819922 26407537 ~ 26407814 (+)
G54711 NA non-coding downstream 901534 26489149 ~ 26491161 (+)
G54724 NA non-coding downstream 950704 26538319 ~ 26540200 (+)
G54777 NA non-coding downstream 1062867 26650482 ~ 26660346 (+)
G54806 NA non-coding downstream 1200209 26787824 ~ 26814492 (+)
AMCG00009104 NA other upstream 91309 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 667019 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 768348 24812618 ~ 24816534 (+)
G54263 NA other upstream 1608976 23883317 ~ 23975906 (+)
G53917 NA other upstream 4290981 21292241 ~ 21293901 (+)
AMCG00009129 NA other downstream 1205922 26793537 ~ 26796768 (+)
AMCG00009164 NA other downstream 2025968 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 3178839 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 3341277 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 3515993 29103608 ~ 29108227 (+)

Expression


Co-expression Network