AMCG00009121


Basic Information

Item Value
gene id AMCG00009121
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26522633 ~ 26532410 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009121
atgtcaaCGGACGCCATCGTCGCAATGCATGAAGACGAAGCGCTGAAGATGCGGAAGTGTGATGCCTGTGCGGAACCTCTCCAAGATTTCGGAGGAAGTTGTCGGTTGATGTCCGATATGTATGGAGGAAAGGACCTGATGTTCAAAGACTCCACAAAGAAGCTGATCCGCATTCCTGAGATCAGCGACTCCTTCCTGTACCTTGGAGCAGAAAACATGAAGATCGTGCGATCACTGCAGAAGGCGATAGAACTGCAGGAGCTGGCGGCCAAGCTTCACAAGCTGTGCCTTATTGTAAACAAATGA
>TU68408
TCCTAGGCCATAGTGTTTATACATTGTATCGTGAAGCGTGAGCGGAGAGAGAGTTAGCCAGCTGAGGTATTTACAGGAAGTTGTCGGTTGATGTCCGATATGTATGGAGGAAAGGACCTGATGTTCAAAGACTCCACAAAGAAGCTGATCCGCATTCCTGAGATCAGCGACTCCTTCCTGTACCTTGGAGCAGAAAACATGAAGATCGTGCGATCACTGCAGAAGGGGCAGCGATAGAACTGCAGGAGCTGGCGGCCAAGCTTCACAAGACGTCATTAAGGAGGAGACCGTCTACAAATGGCGGTTCTGTAAAGACCTAGGCCCTCTGGGTCTGCTGAAGCGCTGTAGAGCCAGAACAGAGCAGGCCAGGAAGAGAGAGGACTTCTGTGCAACATGAAACATGGGCatgtaacacaaaatgtatactgttTACTTCTGGAAAgaacaacaatataaattacaataaaaacaaattaatgcaaCAATGTTTCTCGGGCAAAGATGAAAGCTGGAGAGTTATAATGGATCAAGATACAAtcctttattaatgtattcttcGCTGGTGAATGTCTAAcctacaaaatggaaaaaaaaactttcagtgCCTCATTGtaactttttatgttttaatgcatCTCTACACACTTCAAGGTGTCTAATAaatccaaaacagaaacaaactaagACTGCTct
>TU68409
TCCTAGGCCATAGTGTTTATACATTGTATCGTGAAGCGTGAGCGGAGAGAGAGTTAGCCAGCTGAGGTATTTACGTAAGTAGTAGGATGCACGAATAAACAATAATGTCAATTTTATGTAAGtttaaatgtctattttctGTACTCATTTGCTACcttttgcaaattaatttcatacATTATGACTGCAACAATCAGAAAGTTATCACCATGTAAATGAAAGCCATCGAGCTCACGTGTTGcttctgttgtttatttattattattattattattattattattattattattattattattattattaataataataataatattatgtttcTCATTATATTTAGTACATAGCTTAATGCTACTGCACAGGAGCATGTACTTAGAGGAATAATGTGTCCATGCTGATTGAAGTGTAGGTAGCTGTAGCCTTTTGACGTAGTCCAAAATGCCcaaatgttaaaatacttttgatCTCGTTACCAAGGGAAGGCTAAAGCAAATTTTGATAGGAAATACTTATTAGGACGTGTTTGGTTCCAGATCAGATAATACGGAAATcgatcaaagaaaaataatgtcctTTCTGGCTAAACAGTGTGGAGTTAGGTTCAACCCCCAGCCATCGTCGCAATGCATGAAGACGAAGCGCTGAAGATGCGGAAGTGTGATGCCTGTGCGGAACCTCTCCAAGATTTCGGGTGAATTGGCAGACCTGTGTGCAGTGCTGAATACAGTAGCGTCTGTGGCAATGCCTTACAAACCACCGGTGCTCTTTGAAACTGTATGCTTTATATTGCATATAATTGTCTgcccccgcgaccctcaccaggataagcggttttcgATGATGGAGGGGTGGATGGATATTTGTCTGCCTGGGGTTACTGTGGAACTGAATGTGCGGCCTGTAAGAATGGGGTTTCACTGCCACCTACAGGCCAAAGCATGAATTAACCCAGGCTGTAGATTTAAAGTAGCAGGcagttatttaaattgttaacataaaattaattgcattagTGCATTGTAGACATCATTTTGGCAATTAGATGTGGTAATGATGAGCCGGCCCTGGAGAAGGCCAAGATGGACAAGCTCTTTGAACAGAACCGCAAACGGGAGGACGACCCTGACTTCGTGTACAGCACAGAGGTGGAGGAGTGCGCAGAGTGCTGCAGCTGGGTAACCACGACTCGGAGAAGCTTTAGCCCTGAAAGGAGGGGCCTGAGGACTCGGTGGACAGCCAACAGGTAGATCGctaataatgttaattaattgaaccaattatatACGTTATAGAGGAAGTTGTCGGTTGATGTCCGATATGTATGGAGGAAAGGACCTGATGTTCAAAGACTCCACAAAGAAGCTGATCCGCATTCCTGAGATCAGCGACTCCTTCCTGTACCTTGGAGCAGAAAACATGAAGATCGTGCGATCACTGCAGAAGGGGCAGCGATAGAACTGCAGGAGCTGGCGGCCAAGCTTCACAAGACGTCATTAAGGAGGAGACCGTCTACAAATGGCGGTTCTGTAAAGACCTAGGCCCTCTGGGTCTGCTGAAGCGCTGTAGAGCCAGAACAGAGCAGGCCAGGAAGAGAGAGGACTTCTGTGCAACATGAAACATGGGCatgtaacacaaaatgtatactgttTACTTCTGGAAAgaacaacaatataaattacaataaaaacaaattaatgcaaCAATGTTTCTCGGGCAAAGATGAAAGCTGGAGAGTTATAATGGATCAAGATACAAtcctttattaatgtattcttcGCTGGTGAATGTCTAAcctacaaaatggaaaaaaaaactttcagtgCCTCATTGtaactttttatgttttaatgcatCTCTACACACTTCAAGGTGTCTAATAaatccaaaacagaaacaaactaagACTGCTct

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009121 False 306 mRNA 0.50 5 26522633 26532410
TU68408 False 693 lncRNA 0.42 4 26529239 26532315
TU68409 True 1920 lncRNA 0.41 3 26529239 26532315

Neighbor

gene id symbol gene type direction distance location
AMCG00009119 NA coding downstream 2499 26514126 ~ 26520134 (-)
AMCG00009120 NA coding downstream 28360 26490877 ~ 26494273 (-)
AMCG00009118 NA coding downstream 38932 26474679 ~ 26483701 (-)
AMCG00009114 hs6st1,hs6st1a,LOC107602601,LOC107588870,LOC107727332,LOC107748934,LOC107678693 coding downstream 461977 26059541 ~ 26060656 (-)
AMCG00009113 hs6st1a,LOC107678693,LOC107727332 coding downstream 572631 25942125 ~ 25950002 (-)
AMCG00009124 NA coding upstream 83519 26615929 ~ 26624943 (-)
AMCG00009125 fbxo45,LOC106590630,LOC106578473 coding upstream 98202 26630612 ~ 26635364 (-)
AMCG00009126 arhgef4,LOC108432112,LOC107700563 coding upstream 122755 26655165 ~ 26673239 (-)
AMCG00009127 NA coding upstream 242139 26774549 ~ 26777467 (-)
AMCG00009131 NA coding upstream 254608 26787018 ~ 26788465 (-)
G54706 NA non-coding downstream 114769 26407583 ~ 26407864 (-)
G54697 NA non-coding downstream 271776 26250546 ~ 26250857 (-)
G54682 NA non-coding downstream 431848 26090379 ~ 26090785 (-)
G54613 NA non-coding downstream 998608 25522121 ~ 25524025 (-)
G54610 NA non-coding downstream 1007615 25512833 ~ 25515018 (-)
G54792 NA non-coding upstream 94396 26626806 ~ 26649993 (-)
G54797 NA non-coding upstream 145840 26678250 ~ 26678588 (-)
G54841 NA non-coding upstream 316803 26849213 ~ 26852408 (-)
G54886 psmd2,LOC107579021 non-coding upstream 445697 26978107 ~ 26979245 (-)
G54911 NA non-coding upstream 494129 27026539 ~ 27033024 (-)
AMCG00009105 NA other downstream 991067 25529829 ~ 25531566 (-)
AMCG00009106 NA other downstream 1059943 25460606 ~ 25462690 (-)
AMCG00009100 NA other downstream 1346255 25173677 ~ 25176378 (-)
G54544 NA other downstream 1366295 25153266 ~ 25156338 (-)
AMCG00009060 hltf other downstream 2659598 23825229 ~ 23863035 (-)
G54821 NA other upstream 261131 26793541 ~ 26796654 (-)
AMCG00009148 NA other upstream 578586 27110996 ~ 27153475 (-)
AMCG00009151 NA other upstream 781907 27314317 ~ 27335731 (-)
AMCG00009165 rpl35a,LOC106612432 other upstream 1081188 27613598 ~ 27618172 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other upstream 1852673 28385083 ~ 28390096 (-)

Expression


Co-expression Network