AMCG00009129


Basic Information

Item Value
gene id AMCG00009129
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26793537 ~ 26796768 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009129
AATGGAGACGCTGATTCAATCACTCTGGATGGTGGTGATATATATGAAGCTGGTCTTAAAAACTACGATCTCCACCCAATCATAGCGGAGGACTACGGTGTCGAATCAGACACTTGTTACTACGCCGTTGCGTTGGTGAAGAAAGGCAGTGGTTTCACTTTCAAGCAACTGGCAGGCAAGAAGTCCTGCCACACAGGCCTGGGCAAGTCCGCTGGGTGGAACATTCCCATTGGCACCCTGGTGTCTGAAGGTTTTATTCAATGGGAAGGAATTGAGAATGAGCCCCTGGAGAAAGCTGTGGCCAGGTTCTTTTCTGGAAGTTGTGTCCCTGGAGCAAAAACCCCGGAACTGTGCAGCCAATGCCAGGGAGACTGCAGCCGCTCCCATAAGGAACCCTACTACGATTATTCTGAAGCAAGTACCAGCTGCTCCCTAGAGAAGGTCACATGGTGtctgaaagacagaaaaggaGATGTCGCCTTTGTGGACCACCTCAGAGTACCAGAACAAGCTGACTATGAACTGCTATGCAGAGATGGGAGCAGAAAACCCATTAGTGAATACAAATCCTGTCACCTGGCGAAAGTGCCAGCACATGCAGTCGTCAGCCGAAAAGATCCTGTTTTGGCTGAAAAAATCTGGCATACCCTGGAGGAAGCCCAG
>TU68507
GTGTCTGACATCGAGAAGAAGAAATGTGATGATGTGAATAAAGTGGTCCCTGCCCTTCTCTGTGTAAAGAGGGATTCGGTCAAAAGCTGCTTAGAGGCAATAAAgAATGGAGACGCTGATTCAATCACTCTGGATGGTGGTGATATATATGAAGCTGGTCTTAAAAACTACGATCTCCACCCAATCATAGCGGAGGACTACGGTGTCGAATCAGACACTTGTTACTACGCCGTTGCGTTGGTGAAGAAAGGCAGTGGTTTCACTTTCAAGCAACTGGCAGGCAAGAAGTCCTGCCACACAGGCCTGGGCAAGTCCGCTGGGTGGAACATTCCCATTGGCACCCTGGTGTCTGAAGGTTTTATTCAATGGGAAGGAATTGAGAATGAGCCCCTGGAGAAAGCTGTGGCCAGGTTCTTTTCTGGAAGTTGTGTCCCTGGAGCAAAAACCCCGGAACTGTGCAGCCAATGCCAGGGAGACTGCAGCCGCTCCCATAAGGAACCCTACTACGATTATTCTGGTGCTTTCCAGTGtctgaaagacagaaaaggaGATGTCGCCTTTGTGGACCACCTCAGAGTACCAGTGGCAGAACAAGCTGACTATGAACTGCTATGCAGAGATGGGAGCAGAAAACCCATTAGTGAATACAAATCCTGTCACCTGGCGAAAGTGCCAGCACATGCAGTCGTCAGCCGAAAAGATCCTGTTTTGGCTGAAAAAATCTGGCATACCCTGGAGGAAGCCCAGG

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009129 False 663 mRNA 0.50 6 26794190 26796767
TU68507 True 748 lncRNA 0.49 6 26793537 26796768

Neighbor

gene id symbol gene type direction distance location
AMCG00009128 srprb coding upstream 7747 26782537 ~ 26785790 (+)
AMCG00009122 fam168b,LOC107560647,LOC107590359 coding upstream 150066 26636487 ~ 26643471 (+)
AMCG00009123 pak2 coding upstream 218095 26565688 ~ 26575442 (+)
AMCG00009116 NA coding upstream 255295 26532448 ~ 26538242 (+)
AMCG00009115 NA coding upstream 265046 26521864 ~ 26528491 (+)
AMCG00009138 NA coding downstream 4706 26801474 ~ 26801849 (+)
AMCG00009130 neu4,LOC106581489,LOC102793282 coding downstream 33431 26830199 ~ 26836417 (+)
AMCG00009139 NA coding downstream 101841 26898609 ~ 26903272 (+)
AMCG00009140 psmd2,LOC106613117 coding downstream 173117 26969885 ~ 26981851 (+)
AMCG00009145 NA coding downstream 198190 26994958 ~ 27032957 (+)
G54777 NA non-coding upstream 133191 26650482 ~ 26660346 (+)
G54724 NA non-coding upstream 253337 26538319 ~ 26540200 (+)
G54711 NA non-coding upstream 302376 26489149 ~ 26491161 (+)
G54705 NA non-coding upstream 385723 26407537 ~ 26407814 (+)
G54609 NA non-coding upstream 1272223 25521019 ~ 25521314 (+)
G54812 NA non-coding downstream 25528 26822296 ~ 26824929 (+)
G54833 NA non-coding downstream 52454 26849222 ~ 26851003 (+)
G54880 NA non-coding downstream 186075 26982843 ~ 26984157 (+)
G54928 NA non-coding downstream 299769 27096537 ~ 27096773 (+)
G54936 NA non-coding downstream 314112 27110880 ~ 27117923 (+)
AMCG00009108 NA other upstream 1205922 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 1299964 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 1875674 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 1977003 24812618 ~ 24816534 (+)
G54263 NA other upstream 2817631 23883317 ~ 23975906 (+)
AMCG00009164 NA other downstream 816815 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 1969686 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 2132124 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 2306840 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 2374555 29171323 ~ 29174731 (+)

Expression


Co-expression Network