AMCG00009139


Basic Information

Item Value
gene id AMCG00009139
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26898609 ~ 26903272 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009139
TTTAAAGTCAACAGAAGGGACgcagttttttttttgaaaTTTGTGGACTCATAGGCAGGAGACCATCCACAGGACGGATTGCACTTGTTTAAAGTTCTCCCACAACTCAGCCgcacattgcaaaaataaaagttgtgcatttccattgtgcaataatattatgaatcTATGAAATGCACGTAAGAGATACATTGGCGGAGATGTCGTCCTTCTTAATGCTGTGCCTTCTCTCGGCTGTTGGGATGCCTGTCACTAAAGGCACCTTCACCCTGCGCTATCTCTACACGGGCAGTATCGGACATCCAGACCAGTTCGTGGCGCTGGTGACACTAAATGGTACCCAGATTATGTCCTACGACAGTGGGTCAGGGAAGACTGTCCCCCAGCTGGACTGGCTCACAGAGGACTTGGATGTGAAGTTCTGGAGCGCTGAGAACCAGAGGAACATGGAACAGCAGCTTGTCTTTAAAAGGATGTCTGTGGCAATGCTGAGGAGCTTTAACCACACAACAGTTGatggtCACAAGTACACACGTGTGTCTGAGTGTGAGCTGGATGGTAGCAAGGTGTCGCAACTGTCTGACCGCTTCTGCTATGACGGAGGGGATTTTCTGATCCTAGACCGTTTTGCGGACACATGGAGAGCAGCTATCCCACAGGCCCAGGGCGCTATACAGATGCTGGATGCCAGCACTGTTAGGGTAGACCTGGAGCAGGAGTGCATGGTGTTTCGGGAGACATTAACTCACCTTGAGGGAGCACCACTGGCGCAGCAAGCACCATCATCGGTTACCTTTACAATTTCTGTGGTCCTGTTTACGGTTATGGTTTGCCTTGGACTGATCGTCATCAGCTGCGTGATTGCAAAGAAACGAGGTACTAATGGGCCTGGGTATATAGCAGGTCCTTTAGGGTCCCTGGGTGTCTATTATGCAGGTAACCAGAAGACAAATCCTGACATTGTATGATGGGGCAAACAACTCTCCCTTCTGAAATGCACCGGCCTGCTATTCAGTCTCCAGAGGAGCCGGAGGGAAGGCAAAACTCCATTAGAACATCGCTGGACAATTCCACAGTCCCAAACATCAGcagcaatatttatttactgtggtGCTTTTCATTAAGAAATGGTATTTATAccaatattatttgtaaattaaaatatctatttGTCTGGTATAAGGAATTGCTAAACCTGTGTTTTCTTCATATTGTATTTCTATACATTTATGTGGTTAAAAGTATGTGAATAATTGTATAAAGTAGTGGAACAGAACAggttaatttgtatttacaattaTGGGATCACCTGGGGAGAgttgtttcaattattttaatctggACCACAGTGATCCAGGTTTGGAATCCAATGTGCTgtaattttttcttttgaattgatttgaaaTGCTTCTGCTAAATGTAAGACAGCAAAGCAATTTTATGAAAGAGCACATCACAAACTGATATATTTCTGGTCATTTGCCTGGTAAATGTTGAATTGAAACAAAGATAACCAAACATTCCAAATTGTAAAGATTGTAACCGTGGTATTAGTTTGAACTAGAGCTGTATTGCACATTGTAAAGTACTGTACTTTTTGCACACTAACTTCTGATTTATAAGGTTTTGTTGggtatttaaatgatcaaagTCCTGCACCAGTTAAGCTGCAGAATGAGCCCTTATCTCAGTATCATGCTATGAAAGCACAGGATACAGTGACAGCTGGTGTCTTGTTAACCAGTAGCAAACTATCATTCATGACACTCATTTATCTAGCTAGGTTGAGCTTAGTTATTGGGCGCTAGTACCTTGAACATGGAAACGGCTTcactgtgtgaatgtgtattgAACTCGTATCCTCCTAATAATGAGTTGAACCACTGTTCCCTGCTTTTCTCTCCTTGTGTATAATGCACtatatttttattactgtaactgtacatttatattgcattgtgaATGTCTTATAAAAGTCAGTGTTGACAGTTTGAaagtgtgttcattttttttttaaagacccAGATAAGCATGACTAGTGGTCATCTGGGAAAGCAGCCCTATGGGATCTTGTGATAAGACGCGTGATGTGCCAGGTAAAAGTTTCTCAATCAAGGTTTGATCTGCTTTCTGTGTGgattatgcttttcttttttagataCCTG

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009139 True 2165 mRNA 0.42 6 26898609 26903272

Neighbor

gene id symbol gene type direction distance location
AMCG00009130 neu4,LOC106581489,LOC102793282 coding upstream 62192 26830199 ~ 26836417 (+)
AMCG00009138 NA coding upstream 96760 26801474 ~ 26801849 (+)
AMCG00009128 srprb coding upstream 112819 26782537 ~ 26785790 (+)
AMCG00009122 fam168b,LOC107560647,LOC107590359 coding upstream 255138 26636487 ~ 26643471 (+)
AMCG00009123 pak2 coding upstream 323167 26565688 ~ 26575442 (+)
AMCG00009140 psmd2,LOC106613117 coding downstream 66613 26969885 ~ 26981851 (+)
AMCG00009145 NA coding downstream 91686 26994958 ~ 27032957 (+)
AMCG00009146 NA coding downstream 134057 27037329 ~ 27058960 (+)
AMCG00009144 NA coding downstream 174542 27077814 ~ 27087858 (+)
AMCG00009147 NA coding downstream 199224 27102496 ~ 27104891 (+)
G54833 NA non-coding upstream 47606 26849222 ~ 26851003 (+)
G54812 NA non-coding upstream 73680 26822296 ~ 26824929 (+)
G54806 NA non-coding upstream 84117 26787824 ~ 26814492 (+)
G54777 NA non-coding upstream 238263 26650482 ~ 26660346 (+)
G54724 NA non-coding upstream 358409 26538319 ~ 26540200 (+)
G54880 NA non-coding downstream 79571 26982843 ~ 26984157 (+)
G54928 NA non-coding downstream 193265 27096537 ~ 27096773 (+)
G54936 NA non-coding downstream 207608 27110880 ~ 27117923 (+)
G54948 NA non-coding downstream 410683 27313955 ~ 27317157 (+)
G54949 NA non-coding downstream 416496 27319768 ~ 27319971 (+)
AMCG00009129 NA other upstream 101841 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 1310994 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 1405036 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 1980746 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 2082075 24812618 ~ 24816534 (+)
AMCG00009164 NA other downstream 710311 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 1863182 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 2025620 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 2200336 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 2268051 29171323 ~ 29174731 (+)

Expression


Co-expression Network