AMCG00009144


Basic Information

Item Value
gene id AMCG00009144
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27077814 ~ 27087858 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009144
ATGAACCGAGTAATGGCAGCTTCAgtaAATGAAGACACTACCGACATGTTGCCAAAATCAAGAAGAGCTCTCACCATTCAGGAGATCGCAGCCCTGGCCAGGTCTTCGTTACATGGCATCTCCCAGGTGGTGAAAGACCATGTGACAAAGCCCACGGCGATGGCGCAGGGCCGGGTCGCACACCTGATCGAGTGGAAGGGCTGGTGTAAGCCCACCGACTCCCCTACCGCCCTGGAGTCAGACTTCAACTCTTACTCAGACCTCACTGAAGGGGAGCAGGAAGCGCGATTCGCTGCAGACCCTGTGGCCCCTTTCCCTCACTACCTGCGGGACATACTGCATAGCCATGTGTGTCAGCAGAGGAGCTCGCGGCCGGGGTCGTGCGAGCAGGAGAGCAGTGACCCCTCGCCCACTATCTCCCCGGACACGCTGTGCTCCAGCCTGTGCAGCCTAGAGGACCACCCCCTGCTCAAGGACTTGGGCTCGTCCCCTGCAGACCTGGCCGCCAAGATCCTGGGGGCCCTGCAGGGTGGTGAGGAGCTGCTGTCGCGGCTGCAGCGCAACGGAGAAAGTGCCTTCCGGAGCCTGGGACACATGGTCTGCGAGGACTCCTCATACTCCGTCTCCTACACCGAGTCCTGCTTCTCCCCCGAGGACGAGGAGGACCTGCCCTGCAAGGACTATGACTCAGTGTGCAAGGACGAGTATGGCTACCCAGGCCGGAGAAAGGTGTCCGATGTGGCCTCCTCAGGAGTGGTGTCCctggatgaggaggaggaggaggaagacgaggGTGAGGCGGAGGAAGGGAACGAATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009144 True 819 mRNA 0.61 4 27077814 27087858

Neighbor

gene id symbol gene type direction distance location
AMCG00009146 NA coding upstream 18854 27037329 ~ 27058960 (+)
AMCG00009145 NA coding upstream 44857 26994958 ~ 27032957 (+)
AMCG00009140 psmd2,LOC106613117 coding upstream 95963 26969885 ~ 26981851 (+)
AMCG00009139 NA coding upstream 174542 26898609 ~ 26903272 (+)
AMCG00009130 neu4,LOC106581489,LOC102793282 coding upstream 241397 26830199 ~ 26836417 (+)
AMCG00009147 NA coding downstream 14638 27102496 ~ 27104891 (+)
AMCG00009150 NA coding downstream 276447 27364305 ~ 27377706 (+)
AMCG00009154 LOC107729591 coding downstream 296910 27384768 ~ 27389302 (+)
AMCG00009153 NA coding downstream 315430 27403288 ~ 27416448 (+)
AMCG00009152 ecel1,LOC106613064,LOC102301938,LOC107684524 coding downstream 373372 27461230 ~ 27477658 (+)
G54880 NA non-coding upstream 93657 26982843 ~ 26984157 (+)
G54833 NA non-coding upstream 226811 26849222 ~ 26851003 (+)
G54812 NA non-coding upstream 252885 26822296 ~ 26824929 (+)
G54806 NA non-coding upstream 263322 26787824 ~ 26814492 (+)
G54777 NA non-coding upstream 417468 26650482 ~ 26660346 (+)
G54928 NA non-coding downstream 8679 27096537 ~ 27096773 (+)
G54936 NA non-coding downstream 23022 27110880 ~ 27117923 (+)
G54948 NA non-coding downstream 226097 27313955 ~ 27317157 (+)
G54949 NA non-coding downstream 231910 27319768 ~ 27319971 (+)
G54950 LOC106613058 non-coding downstream 234091 27321949 ~ 27322190 (+)
AMCG00009129 NA other upstream 281046 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 1490199 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 1584241 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 2159951 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 2261280 24812618 ~ 24816534 (+)
AMCG00009164 NA other downstream 525725 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 1678596 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 1841034 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 2015750 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 2083465 29171323 ~ 29174731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G21702 NA non-coding CI01000002 null 1162460 ~ 1162881 (+)
grasscarp (Ctenopharyngodon idella) CI01000149_00249452_00257784 NA coding CI01000149 null 249287 ~ 257784 (-)