Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00009149 |
| gene name | clcn2 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030126.1 |
| NCBI id | CM030126.1 |
| chromosome length | 46242406 |
| location | 27169408 ~ 27200307 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| clcn2 | Enables voltage-gated chloride channel activity. Involved in regulation of aldosterone biosynthetic process. Located in plasma membrane. Implicated in idiopathic generalized epilepsy 11 and primary hyperaldosteronism. |
| description |
|---|
| PREDICTED: chloride channel protein 2 isoform X2 |
| id | description |
|---|---|
| K05011 | CLCN2; chloride channel 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00009149 | True | 1236 | mRNA | 0.54 | 11 | 27169408 | 27200307 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00009143 | LOC108277812 | coding | downstream | 251929 | 26906530 ~ 26917479 (-) |
| AMCG00009141 | ppp1r7,LOC102778584,LOC106568867 | coding | downstream | 271752 | 26892271 ~ 26897656 (-) |
| AMCG00009142 | NA | coding | downstream | 290529 | 26867718 ~ 26878879 (-) |
| AMCG00009133 | NA | coding | downstream | 303243 | 26861258 ~ 26866165 (-) |
| AMCG00009135 | NA | coding | downstream | 308679 | 26852479 ~ 26860729 (-) |
| AMCG00009158 | NA | coding | upstream | 277212 | 27477519 ~ 27490312 (-) |
| AMCG00009155 | NA | coding | upstream | 295496 | 27495803 ~ 27503596 (-) |
| AMCG00009160 | abcf3,LOC106580643,LOC106612436 | coding | upstream | 307721 | 27508028 ~ 27516925 (-) |
| AMCG00009156 | LOC108229448 | coding | upstream | 317202 | 27517509 ~ 27522991 (-) |
| AMCG00009159 | ap2m1b,LOC108440593,LOC107602122,LOC108264350 | coding | upstream | 327950 | 27528257 ~ 27540565 (-) |
| G54914 | NA | non-coding | downstream | 135192 | 27033152 ~ 27034216 (-) |
| G54911 | NA | non-coding | downstream | 136384 | 27026539 ~ 27033024 (-) |
| G54886 | psmd2,LOC107579021 | non-coding | downstream | 190163 | 26978107 ~ 26979245 (-) |
| G54841 | NA | non-coding | downstream | 317000 | 26849213 ~ 26852408 (-) |
| G54797 | NA | non-coding | downstream | 490820 | 26678250 ~ 26678588 (-) |
| G54978 | NA | non-coding | upstream | 220511 | 27420818 ~ 27422678 (-) |
| G55025 | NA | non-coding | upstream | 325379 | 27525686 ~ 27525979 (-) |
| G55026 | NA | non-coding | upstream | 325740 | 27526047 ~ 27527494 (-) |
| G55153 | NA | non-coding | upstream | 670695 | 27871002 ~ 27871261 (-) |
| G55268 | NA | non-coding | upstream | 1288344 | 28488651 ~ 28505796 (-) |
| AMCG00009148 | NA | other | downstream | 15933 | 27110996 ~ 27153475 (-) |
| G54821 | NA | other | downstream | 372754 | 26793541 ~ 26796654 (-) |
| AMCG00009121 | NA | other | downstream | 636998 | 26522633 ~ 26532410 (-) |
| AMCG00009105 | NA | other | downstream | 1637842 | 25529829 ~ 25531566 (-) |
| AMCG00009106 | NA | other | downstream | 1706718 | 25460606 ~ 25462690 (-) |
| AMCG00009151 | NA | other | upstream | 114010 | 27314317 ~ 27335731 (-) |
| AMCG00009165 | rpl35a,LOC106612432 | other | upstream | 413291 | 27613598 ~ 27618172 (-) |
| AMCG00009186 | LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 | other | upstream | 1184776 | 28385083 ~ 28390096 (-) |
| AMCG00009215 | gpr17 | other | upstream | 1857634 | 29057941 ~ 29063030 (-) |
| AMCG00009229 | ccd50,LOC106613514 | other | upstream | 2460653 | 29660960 ~ 29704929 (-) |
