AMCG00009156 (LOC108229448)


Basic Information

Item Value
gene id AMCG00009156
gene name LOC108229448
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27517509 ~ 27522991 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009156
GCCGCGGTGGCTGCCCAGGGGAGGGAGGAGGCGGCTaggagcaggaggagagggagagtaaAAGTGTGAGGGATTGGAAGCAGacggggagaaagagagaagaagaaagcagcgattgagagagagagagagaaacggaaGGATTGCAACTGGGAGACTATGGGCAGGAGTGGAGGGGTGCCTGCAAAGTCACTGTGCCCCCTTCTCGGGCGACACAATGCCgtcgtgctgctgctgctgctgctgctgctggagtcAGTGGCGACGTTCCCGGCATGGAGGGCGGAGATGGAGTCTGGACTGTCCTCTCTCAAGCAGTCGTTTGCTATTCCCAGTTCTGTGGGACAGTTTCTGGTGACCCGATCCAAACGCTATGCCATCAACCCTATGGGCCAAAAGTGGGAGCACTACAACATCACCTACAaGATCACGCAGTACCCCAGCACGCTGTACCGCGAAGACACAGCCCGGGCCATCGCCATCGCCTTCAAAATGTGGAGTGCCGTGTCACCCCTCACCTTCACTGAGGTCCCTCCAGACAGCCCCGCCGACATCCGCATTGGCTTCTACACGTTTAACCACACGGACTGCTGGTGGTCGCCGCTGCACCCCTGCTTCGATGGGCTGAATGGGGAGCTGGCCCATGCCTTCCTGCCCCCCCGCGGGGAGATCCACTTTGACAACCACGAGTTCTGGGTGCTGGGCAGATCTCGCTTCAGCTGGAAACAGGgtgtgtggaTGAACGACCTGGTGCAGGTGGCGGCTCATGAGATAGGCCACGCTCTGGGGCTCTGGCACTCCCGCCACCCTCAGGCACTCATGCACCCCAATGCCACTCACACCGGCCAGCGTACCATCTCCCTTGACGACGTCTGGGGCATCCAGAGGCTCTATGGCTGCGTGGACAAGAGGCGTCTGTGTGACCCCTGGGCCCGGGTGGGCTTCTGCGAGCGGAGGAAGGCGTTCATGCAGAAGCACTGCCCCCGGCGCTGCGGCCTCTGCCACGGTTACTGCGTCGCCATTTCAGCTTCTGCACCAGTTGCCAGTCACACCCCAGATGTTCTTCCCACAGTGAAGCCCACCCCGTCCATCATCAAGACCAAACTGGTCCCCAGGGGCAAGGTGGTGAGCTTCCGCTGTGGCACACAGAGCAAACCGACCAACAGAGCGCCCCCTAAAGTCAGTTGGTACAAAGACGGTGAGCTGTTGTCCTCCTCAGTGCCCGGGTACATCACGGTGAACAGCCGAGACCTGCGCATCGTGGCTAACGAGTTTAACGAGGGCCAGTACACCTGCCGAGTGCACCGCAGCGGCTCCATCATCACCTCCAACTCCTGGATCATTAGACTGAAGCCAGAGCCCAGCAACAGCTGAGGGCTTGGgagagactgacacacacagagtggGACCCGTACCACACACATGCCACctacagagagacagggaccGAGTGCTGAGACAGAATTATGCCTTCTTCACTGTCTACAGAGAGACAACTGGCACAAGCACACTGTCCACAGAACATATTGGCATCAGTCTTTAAGGCTTTACCCCAGTCCCATACTTGAagaagcacacacaaaaataaaccttgGATTTACCCCCTGGAGCTCTCTATGGGGGAACACGTCCTGcaaattgcactttgtattgctcttatattttatatgtcaCCCTGTACAAGGGCgtcttctaataaataataataataataataataataataataataataataataataaagagacagggagggacTCACGCTCCAGCCTTTACCTGCCTCTGACACTGAACCCTGTCTATGGTGCCATCTGGTGGGTAATTGTGGAACAGAACTGTGGAGGGAGAATCTGTGCattcttaataaaatataaccccACTATGGTAGCctttgtgtttgtctctctATCCATCTACTTTCTGAGACTGTGCAGTTAATCTGTTAAAAGTGTCACCCCCATTAATACTGTGCTCCTGTCCTTGTGCTAAGGTCAGAGAGGAGAGGGTTGGAATAGTTCTGATACACATTCCATtctaatatacaatatactCCACACATTgtcacatgcatatatatatatatctgcatgTGACAATGTGTGGAGTACTGTTCTCTTGCAGGAACTTTATTATTAGTCTGTGTGTGAAAACACATCTACATACTATCTAGCAAAACCTCAGTCAATCGAACTGGCTTGAtatagtaatacta

Function

NR:

description
PREDICTED: matrix metalloproteinase-23-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0001889 liver development biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009156 True 2215 mRNA 0.53 9 27517509 27522991

Neighbor

gene id symbol gene type direction distance location
AMCG00009160 abcf3,LOC106580643,LOC106612436 coding downstream 584 27508028 ~ 27516925 (-)
AMCG00009155 NA coding downstream 13913 27495803 ~ 27503596 (-)
AMCG00009158 NA coding downstream 27197 27477519 ~ 27490312 (-)
AMCG00009149 clcn2 coding downstream 317202 27169408 ~ 27200307 (-)
AMCG00009143 LOC108277812 coding downstream 600030 26906530 ~ 26917479 (-)
AMCG00009159 ap2m1b,LOC108440593,LOC107602122,LOC108264350 coding upstream 5266 27528257 ~ 27540565 (-)
AMCG00009161 dvl3,LOC107670590,LOC107758060,LOC107575491 coding upstream 26715 27549706 ~ 27569752 (-)
AMCG00009157 rnpepl1 coding upstream 49194 27572185 ~ 27579419 (-)
AMCG00009166 abcc5,LOC106612343,LOC107671530 coding upstream 58884 27581875 ~ 27610878 (-)
AMCG00009168 NA coding upstream 102800 27625791 ~ 27656578 (-)
G54978 NA non-coding downstream 94831 27420818 ~ 27422678 (-)
G54914 NA non-coding downstream 483293 27033152 ~ 27034216 (-)
G54911 NA non-coding downstream 484485 27026539 ~ 27033024 (-)
G54886 psmd2,LOC107579021 non-coding downstream 538264 26978107 ~ 26979245 (-)
G54841 NA non-coding downstream 665101 26849213 ~ 26852408 (-)
G55025 NA non-coding upstream 2695 27525686 ~ 27525979 (-)
G55026 NA non-coding upstream 3056 27526047 ~ 27527494 (-)
G55153 NA non-coding upstream 348011 27871002 ~ 27871261 (-)
G55268 NA non-coding upstream 965660 28488651 ~ 28505796 (-)
G55326 NA non-coding upstream 1198549 28721540 ~ 28727970 (-)
AMCG00009151 NA other downstream 181778 27314317 ~ 27335731 (-)
AMCG00009148 NA other downstream 364034 27110996 ~ 27153475 (-)
G54821 NA other downstream 720855 26793541 ~ 26796654 (-)
AMCG00009121 NA other downstream 985099 26522633 ~ 26532410 (-)
AMCG00009105 NA other downstream 1985943 25529829 ~ 25531566 (-)
AMCG00009165 rpl35a,LOC106612432 other upstream 90607 27613598 ~ 27618172 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other upstream 862092 28385083 ~ 28390096 (-)
AMCG00009215 gpr17 other upstream 1534950 29057941 ~ 29063030 (-)
AMCG00009229 ccd50,LOC106613514 other upstream 2137969 29660960 ~ 29704929 (-)
AMCG00009235 NA other upstream 2454946 29977937 ~ 29990810 (-)

Expression


Co-expression Network