AMCG00009164


Basic Information

Item Value
gene id AMCG00009164
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27613583 ~ 27626011 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009164
ATGGCCTTGGCGGGCAGGTTGCTGGTGAACTTGGCACGGACCATTCCACTGCTTCCGTGGGCTCGCATCACCTTGCCCCAGATCACACGTATGGCAGCCCAGCCCGGAGGAGTGGAGGGTCTCCGGGTGTGTACAGTCCTGCAGGACTGCTTGGACCAACTGGCTGTGCTCGGACATATCATGCCCGTTACCTATGAGGGCCGCCCCGATGCAGACATGATTGTGTCCGCTGATGTTGGCCAGGTGCTGCAAGAGCAGCAGGCGGTGGAGATGCGCTTCAAGGAGGTGATGTCATCGCGGTGGCGAGATGGGGCGGGGCTTGCGCAGGTTACAGGGGAGCTGCAGAAATCCCAGCTGCAGCTGAGTCAAGTGCTGAAAAACAGCCCTCTTACACCAGAGAACCTTTCGAAGGTGCAGAGAGACCGGCAGTTTGCATCGCAGGTGATTTCAGAGGTGCTGGCGGAGCTACAGGAAGCGGGCACCATCCAGAGCCTGCTATTGGCTGTCCAGGCACAGAAGGAGAGGAAGGCCAATCTGCATGACATCATCGTCAGggaggaggagggcaggCACAGAGTCCGAGCTCTGCAGAGACAGCTGGTTGACATCCGCCAAGAAAAAGAACTGGAGCTACAGCGGCGGGAGGAGATGATTGCCCACCTGAAGGACCAGCTACAGGAAATGAAGGCCAAGACAGGGCTGGAGGGCAAGTATGTGAAGAACAGTGCAGAGCTGCAGCTGTACCAGGGAAACAAGATCAACACCCACTCTGAGAACGAGCTGCAGGCATCAATACAGCATGTGCAGGATAAGATTGACAAGGAGACACGTGTTCACATTGAGGTGGAGAGTTTTCTGAAAGAGAACCAGAATAGACTGGAGGAGAAGCTGGAGATGCTTCCCGAAGATGTCCTCTCCCTGGGCAGCTCGGAGCGTCCACAGGGCTCCCCACACCCCCAGCAGAGGCACCACTGA
>TU68775
GTTTCCAGGTCTTTATCCCCATAATGAAAGAATAAGGTTACAAACGCAGAAAAACAATGGACACATTCAGTGTGGACCAGTCTTTTATTGTATGTACACAACAGCACCACATTACACCCGCGATGGATACAGCatctgaaagaagaaaaataaataagtcagaAACCTGTGGAAGTTCAGCATGCTGCTGCAGTCGGTCAAAATGAGTGGGGAACTTACACAAATGACACATGAGCACTGTAAAGAACTAAACTTCACGTTACTACAATTTTAAAGCTGAGCCTGGCAAGGGCTGACAGCCTCTCAACAGTATAGATTATTTCCATCACTGCAACATGTAGCTCTCAGgctctgcattctgttgttgccctgcttcttgttgtttaacaaacCTTGCTGTGTTGCATCTTTTATcaagaggttattcattcataaatctATGTAGTTGGTCATTTAAATGTCTCGTTAATCAGTCACAATCTGATAAATCTGATAAAGAAGGAAAGGACTGTCTTCTCTCTTGCATACAACCAATGTAACAATGAGACTGAGACTATGAGGGAACTTCCCTGTCAGGCTGGAACTGTGTACGGTGACCTGACAGATGGTGAGAGACAGGTGTGGATGGAGAGAGAAGGGTGAAAGACACTCACCACTCTGATCCTGTGCCCAATGGCCTTGGCGGGCAGGTTGCTGGTGAACTTGGCACGGACCATTCCACTGCTTCCGTGGGCTCGCATCACCTTGCCCCAGATCACACGTGTCTTATTGGGCTTGCCACCAGGCGTCACAGTGTTCTCTTGGCCTTGTAGACGTAGGCACATCGCTTGCCCAGGTAGAACTCGGTCTCCTCGCGAGTGTACACACCCTCGACCTTCAGCAGCGCCGTGTGCTCACGCTGGTTACGCAGCCCACGCTTGTACCCGGAGAAGATCGCCTTGCACCACAgtCTGGCATTGTGAAAAGAGTGTCCAGGCACAGCCAAACCTGCAGGTGGGAGAGGACAGGTCAGTAGTGAGGGGAGTCCAGAGCAATAAaagatacatttccatttagACACACAACACCAGGATAGCATGAAGCTCAATGTACAATCTCATAAGATAATGCTcacataaaacaatgaaaaacaaagggaTTAATTGCCCAATTTGATATAGACTCAATTGTTTATATACATGGGGATTCTAT
>TU68786
GTCCCTGCAGCCGGGGTCAATAACATGATTGCCAACAACACACCCAGGTCAGTTTAAAATATctatacagagaaaaaataacattataaaaatgatAGAAAACACCTTTAACTTCCCTTTTCAAAGCCCGAAGTCCATAAAAGAGCAAgttaaaatgcttaattatgttttctctttctttctattttcattaatttttaaattgtctCATCCTGCCCGAAAGGAATCGGCGCTCTGGGCACCGAGGGACTCTGCCGAGAGTCTGTCACATGTGATCTAACGCACACAAATGATGTAGGATTAGAGCTGCAGGCAAACTAATAAAACCCCCAACCCCCTTCACTCCCTCGAGCCCTGCTGCTTTCACACACAGGCtcagcaaacaaacactggcTGGTGCCTCTACACTTTTGAAGTCTggaatttaaatagaaaaaacattaagaagTTTTACTGTAAActttggttgtattttttttttttttccggtgTGACAACACCTGGCCTCTACCTGTCcgataaaaaacatttataaaacaatccTGTAAGTTTAGTGCTGACGTAAGAAGAGGCACTTTTAGACAAGTACAGGTCAGTAACATATTCATCTTGGCAAGCTGTGCAGACTTGCCGTATATCTGTAACAGTATTGTAAACGCTGAATTCGCATTTGTTTCATTACACAAGGGAAGCTTATatatgattaaaagaaaaaaactcctGATCTTGACAATCAGTCCTTATGAAAGGCAGCTGATGCACTCAAGGCATTTTCATTCCCAAAGGCAATGCATGTTCAAGTGTTGTTGAACATCCAGGCTTCCCGAAGATGTCCTCTCCCTGGGCAGCTCGGAGCGTCCACAGGGCTCCCCACACCCCCAGCAGAGGCACCACTGATGTCAGTGAGCCGGCCAATCAGGGACGGCCTGACAGAAAGAGGATCCCACAGCTACAGTCATAGTGTCACGAGTCTGAGGTCTTAAGCTGTGGGGTTTTAGGGGGAATAATAACTGGAGGATCGTTATTTTCTTAATGCTAAAAACCGTTTTCTACAGGCTTTACAATGTTACCTTTGTCCCCAGGGTGTAACTGGTCATAGATGTTAGTTTTAAAATGGCCTTGATACACACTGAGGGTGACACACACCTACCTTTAGAGCCGAGGGGGTGGAGCAAGGTAACATTAAATAAtgggagaggaaaagaaaaactaatattaacaaaacaaaataaattgtcacagatttcttttttgtcaGTTTATCAGCTGGCTCTCCCAGCCCACAAACAACAGACCTTAGAGACAGGGCTCTCCTCTCTCGATGATTACCTGGCCAGACGGGTAGGGTCAAAACTTACAGCTTTTTTAAACAGTGCAGGAACACataacaaaatagtttttctctTAGAGGTACAAGCTTAACAATTTGTCTGCTAGTGATTCAAACCCACCTCGCAGTGCTGCCTGCTCGTTCATGCAATTGCCTTCTGCATGTGTTCCTCTGTACCAGCTGCAAAAGCTGGAGTCTGTTTGGTGTCATCAGTTGACACCCATACTTACTGTGCATCTGTCCTGCAGTAGTGTCTGTATGACTGTCTGTGGGCTAAACTGTAAGAATGGCTGTTCTCTCAAAAATAAAGGCTGAACCACACAGCCAGCGGAGAGAACAGAATATAAAACCCCTATAATAGAAAAATCAAGAACCCATATccccttccacacacacagcacagaatcACTATAAAAACTCctgtgacattaaaataataataataataataataataataataataataataatagtacaaaaGGGACAAAAATCaacccgagagagagagaaaatgggaATAGTGGAACGAGACATCACAGTGGCCAATAGGTTAGTGACACAGTgactccctctttctctctcccccttcctctccgTTTGTGTCCGTCTCTGTGGCTATCTGTCCGTGTGTTCTGAAgtggtgctctctctctccaggcacAGGGGAAGCTGTAATGTGTGGTGCTCGGGCATCCCAGTCCTCCCCACTCTCTATTTTCTGTTGCATCAGGTAGCTGTGCAGACACAGGTAGGTTCCAGACATGGTTGGGTGGGGGAGGCGGGGTCTCAGTCTTTGCTAGGTCTTGGGGAAGGCTGGGTGTCAGAGAGTGTCCAGCAAGCGGGAGTTAGGGTGCTGTCAGTCTCTCCAAGTCTGGGGGGATGGGGGACAGGCAGGGCGTCTTGTcttgtcagtgtgtctgtcctAGACTTGTGAGGGCGAGGGCGGGGGGTGTTTTGGGGGGGCGAGCTCCAGCAGCGCGCCGACCGTCCCAGCCACCTGGGGCAAGCCTCGCTCCTCCAGGATGTGCAGTGGCAGACATAGCTGGGCCTGAAGACAGATGCACAACACAGGgagacgcacacaaacacagcaatgaTACAGGGACAGACCAACAAGGTGATGAGATGTGGGGAGAGGAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009164 False 975 mRNA 0.57 9 27614255 27624432
TU68775 False 1191 TUCP 0.46 3 27613583 27617378
TU68786 True 2476 lncRNA 0.46 2 27623516 27626011

Neighbor

gene id symbol gene type direction distance location
AMCG00009162 NA coding upstream 119058 27493401 ~ 27494525 (+)
AMCG00009152 ecel1,LOC106613064,LOC102301938,LOC107684524 coding upstream 135925 27461230 ~ 27477658 (+)
AMCG00009153 NA coding upstream 197135 27403288 ~ 27416448 (+)
AMCG00009154 LOC107729591 coding upstream 224281 27384768 ~ 27389302 (+)
AMCG00009150 NA coding upstream 235877 27364305 ~ 27377706 (+)
AMCG00009163 rubcn,LOC105896451 coding downstream 34624 27660635 ~ 27671005 (+)
AMCG00009170 NA coding downstream 61874 27687885 ~ 27696664 (+)
AMCG00009169 NA coding downstream 106544 27732555 ~ 27733810 (+)
AMCG00009173 pcyt1a,LOC103040438 coding downstream 131212 27757223 ~ 27768167 (+)
AMCG00009175 NA coding downstream 216522 27842533 ~ 27860126 (+)
G54997 NA non-coding upstream 86089 27526067 ~ 27527494 (+)
G54969 NA non-coding upstream 190908 27420529 ~ 27422675 (+)
G54951 NA non-coding upstream 290788 27322540 ~ 27322795 (+)
G54950 LOC106613058 non-coding upstream 291393 27321949 ~ 27322190 (+)
G54949 NA non-coding upstream 293612 27319768 ~ 27319971 (+)
G55184 NA non-coding downstream 699348 28325359 ~ 28325659 (+)
G55202 NA non-coding downstream 753504 28379515 ~ 28380370 (+)
G55203 NA non-coding downstream 754381 28380392 ~ 28380755 (+)
G55204 NA non-coding downstream 754969 28380980 ~ 28381299 (+)
G55205 NA non-coding downstream 756989 28383000 ~ 28383503 (+)
AMCG00009129 NA other upstream 816815 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 2025968 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 2120010 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 2695720 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 2797049 24812618 ~ 24816534 (+)
AMCG00009204 NA other downstream 1140443 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 1302881 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 1477597 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 1545312 29171323 ~ 29174731 (+)
G55573 NA other downstream 2281900 29907911 ~ 29911564 (+)

Expression


Co-expression Network