AMCG00009165 (rpl35a,LOC106612432)


Basic Information

Item Value
gene id AMCG00009165
gene name rpl35a,LOC106612432
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27613598 ~ 27618172 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009165
attatcccttttttgttttctaatcagGCACTCTTTTAGTCACCAGCAGGACGTTGATGGTGTTAATTTCCCAGCATGCTATGAAGGCCCCCCTTTTCCTCCATCTTGGATTTCTGTGCAGGTTTGGCTGTGCCTGGACACTCTTTTCACAATGCCAGGAAGCGTGGGCTGCGTAACCAGCGTGAGCACACGGCGCTGCTGAAGGTCGAGGGTGTGTACACTCGCGAGGAGACCGAGTTCTACCTGGGCAAGCGATGTGCCTACGTCTACAAGGCCAAGAAGAACACTGTGACGCCTGGTGGCAAGCCCAATAAGACACGTGTGATCTGGGGCAAGGTGATGCGAGCCCACGGAAGCAGTGGAATGGTCCGTGCCAAGTTCACCAGCAACCTGCCCGCCAAGGCCATTGGGCACAGGATCAGAGTGatGCTGTATCCATCGCGGGTGTAATGTGGTGCTGTTGTGTACATACAATAAAAGACTGGTCCACAC
>TU68783
AAGGCCCCCCTTTTCCTCCATCTTGGATTTCTGTGCAGGTTTGGCTGTGCCTGGACACTCTTTTCACAATGCCAGGAAGacTGTGGTGCAAGGCGATCTTCTCCGGGTACAAGCGTGGGCTGCGTAACCAGCGTGAGCACACGGCGCTGCTGAAGGTCGAGGGTGTGTACACTCGCGAGGAGACCGAGTTCTACCTGGGCAAGCGATGTGCCTACGTCTACAAGGCCAAGAAGAACACTGTGACGCCTGGTGGCAAGCCCAATAAGACACGTGTGATCTGGGGCAAGGTGATGCGAGCCCACGGAAGCAGTGGAATGGTCCGTGCCAAGTTCACCAGCAACCTGCCCGCCAAGGCCATTGGGCACAGGATCAGAGTGatGCTGTATCCATCGCGGGTGTAATGTGGTGCTGTTGTGTACATACAATAAAAGACTGGTCCACACTGAATGTGTCCATTGTTTTTCTGCGTTTGTAACCTTATTCTTTCATTATGGGGA

Function

symbol description
rpl35a Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development and erythrocyte differentiation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 5. Orthologous to human RPL35A (ribosomal protein L35a).

NR:

description
PREDICTED: 60S ribosomal protein L35a

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009165 False 492 mRNA 0.53 5 27613652 27618172
TU68783 True 497 TUCP 0.54 5 27613598 27618089

Neighbor

gene id symbol gene type direction distance location
AMCG00009166 abcc5,LOC106612343,LOC107671530 coding downstream 2720 27581875 ~ 27610878 (-)
AMCG00009157 rnpepl1 coding downstream 34179 27572185 ~ 27579419 (-)
AMCG00009161 dvl3,LOC107670590,LOC107758060,LOC107575491 coding downstream 43846 27549706 ~ 27569752 (-)
AMCG00009159 ap2m1b,LOC108440593,LOC107602122,LOC108264350 coding downstream 73033 27528257 ~ 27540565 (-)
AMCG00009156 LOC108229448 coding downstream 90607 27517509 ~ 27522991 (-)
AMCG00009168 NA coding upstream 7619 27625791 ~ 27656578 (-)
AMCG00009167 NA coding upstream 55500 27673672 ~ 27685047 (-)
AMCG00009172 NA coding upstream 78558 27696730 ~ 27710472 (-)
AMCG00009171 NA coding upstream 102698 27720870 ~ 27728202 (-)
AMCG00009174 NA coding upstream 173201 27791373 ~ 27798650 (-)
G55026 NA non-coding downstream 86104 27526047 ~ 27527494 (-)
G55025 NA non-coding downstream 87619 27525686 ~ 27525979 (-)
G54978 NA non-coding downstream 190920 27420818 ~ 27422678 (-)
G54914 NA non-coding downstream 579382 27033152 ~ 27034216 (-)
G54911 NA non-coding downstream 580574 27026539 ~ 27033024 (-)
G55153 NA non-coding upstream 252830 27871002 ~ 27871261 (-)
G55268 NA non-coding upstream 870479 28488651 ~ 28505796 (-)
G55326 NA non-coding upstream 1103368 28721540 ~ 28727970 (-)
G55333 NA non-coding upstream 1137126 28755298 ~ 28755633 (-)
G55359 NA non-coding upstream 1225301 28843473 ~ 28893883 (-)
AMCG00009151 NA other downstream 277867 27314317 ~ 27335731 (-)
AMCG00009148 NA other downstream 460123 27110996 ~ 27153475 (-)
G54821 NA other downstream 816944 26793541 ~ 26796654 (-)
AMCG00009121 NA other downstream 1081188 26522633 ~ 26532410 (-)
AMCG00009105 NA other downstream 2082032 25529829 ~ 25531566 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other upstream 766911 28385083 ~ 28390096 (-)
AMCG00009215 gpr17 other upstream 1439769 29057941 ~ 29063030 (-)
AMCG00009229 ccd50,LOC106613514 other upstream 2042788 29660960 ~ 29704929 (-)
AMCG00009235 NA other upstream 2359765 29977937 ~ 29990810 (-)
AMCG00009241 NA other upstream 2631699 30249871 ~ 30256499 (-)

Expression


Co-expression Network