AMCG00009172


Basic Information

Item Value
gene id AMCG00009172
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27696730 ~ 27710472 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009172
ATGGGTCACAAAGCCAGACAGCTCTGCATGCTCTCCCTGCTACTGATGCTACACCATGCCCTCCTATACAGTGGTGAGATCACATACTATGGAACAACCAACAGTGACATCAACATCACTTTCTTCTTCAACAAGGACCTTTCCCCCGTCAAATCAGTCAGTCTTCACAAGAACGAGGAGAAAATTGATGAGTGGATTAACATGAACATGATCAGCTCTAATGGCAGAAGAGGGTTACTTTTCCGTCAGCAAAACTTTACACTGCAGATCCGCCAACTGCGACTCGACGATAATGGGACCTATAAATTAGTCTTGTACCTCAAAAATCAAGACCCCATGCTGGAAAGTCACCCTGTGCATCTGAATGTCAGCGAGAGAAAGGACCTGCCAGACCCAGGAGACAATAAGAGCACAGTCCAGCCTGAGCATGGCCTCCCCACCCCTGTCACCTACATCATCGTGATCTCCGCGGTGGCTATTCTGGTGCTGCTGGGCGCATTGGCTTACAGTCTCTACCTGGCCTGCTACAGGGGTCCAGACACCCTGGCCCAATCAGCTACCCTACCAGGACCCCCAGCTCCCAAGGTCAAAATTCAGGACACCAGGCATTCCAGCCTACATGAAACATACTCTCTACAATACGGGGTGCTGGAGTTCCCCAGGGAGCAAGGGACAAAGAAAAAGGAGGCatggctgagagagagggacagtgtAGAGTATGCCACAATCACTTTCACCCCCAGCCACAATGCAGGGCAGAACCCCAAGGCACAGTCGGGGCTCTGCTGTGGACCAACCCAGGCCCGGAAGCTCACAGTCAGTACAGCCACCGAGACACTGGACAGGACTAAAGACGttactgAAACCCACACCATCGCCAggttcactttctcactctgcAACAAAAGGTGGGCCTCAGCGCAGGTGAAGTTGGTGTTCCGCATGCAACTGAACAAAAGCCAGGGCCGGGGCAAGGTCATAGTGCACTGGTACAAGCGGAAATGCAGAGTATGCGAAGGCTCCACCTTTGAGGAGCCAAATTTCAGCGATGACAATGTGAAGAAGATGCTGGACAAGCTGATGGAGAAAATCCGCTTCAAATTCTACAATGAAAGACACAGTCAGACCAGAAACTACTTCTACTTTGAAAGGGATATGAACGGGCCACATGAGGAAAAACACTTTAAACACCAGCTTGTTCGGTCACCCTCacataaacaggaagtgacaaCAAAGAACCTTGCATTGGCGCTTTCCGAACATCCCCCCGTGGTCCAAGTCAAAAACAGGGCCCTGAGCAGAGTGCACATCACTGAGCTGGAAGACTGGCAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009172 True 1335 mRNA 0.51 9 27696730 27710472

Neighbor

gene id symbol gene type direction distance location
AMCG00009167 NA coding downstream 11683 27673672 ~ 27685047 (-)
AMCG00009168 NA coding downstream 40152 27625791 ~ 27656578 (-)
AMCG00009166 abcc5,LOC106612343,LOC107671530 coding downstream 85852 27581875 ~ 27610878 (-)
AMCG00009157 rnpepl1 coding downstream 117311 27572185 ~ 27579419 (-)
AMCG00009161 dvl3,LOC107670590,LOC107758060,LOC107575491 coding downstream 126978 27549706 ~ 27569752 (-)
AMCG00009171 NA coding upstream 10398 27720870 ~ 27728202 (-)
AMCG00009174 NA coding upstream 80901 27791373 ~ 27798650 (-)
AMCG00009178 mfsd8,LOC106510830,LOC107086866,LOC108234272,LOC102791428,LOC101485663,LOC102289364,LOC107392755 coding upstream 653806 28364278 ~ 28378869 (-)
AMCG00009179 NA coding upstream 670476 28380948 ~ 28383523 (-)
AMCG00009185 NA coding upstream 679939 28390411 ~ 28401946 (-)
G55026 NA non-coding downstream 169236 27526047 ~ 27527494 (-)
G55025 NA non-coding downstream 170751 27525686 ~ 27525979 (-)
G54978 NA non-coding downstream 274052 27420818 ~ 27422678 (-)
G54914 NA non-coding downstream 662514 27033152 ~ 27034216 (-)
G54911 NA non-coding downstream 663706 27026539 ~ 27033024 (-)
G55153 NA non-coding upstream 160530 27871002 ~ 27871261 (-)
G55268 NA non-coding upstream 778179 28488651 ~ 28505796 (-)
G55326 NA non-coding upstream 1011068 28721540 ~ 28727970 (-)
G55333 NA non-coding upstream 1044826 28755298 ~ 28755633 (-)
G55359 NA non-coding upstream 1133001 28843473 ~ 28893883 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 78558 27613598 ~ 27618172 (-)
AMCG00009151 NA other downstream 360999 27314317 ~ 27335731 (-)
AMCG00009148 NA other downstream 543255 27110996 ~ 27153475 (-)
G54821 NA other downstream 900076 26793541 ~ 26796654 (-)
AMCG00009121 NA other downstream 1164320 26522633 ~ 26532410 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other upstream 674611 28385083 ~ 28390096 (-)
AMCG00009215 gpr17 other upstream 1347469 29057941 ~ 29063030 (-)
AMCG00009229 ccd50,LOC106613514 other upstream 1950488 29660960 ~ 29704929 (-)
AMCG00009235 NA other upstream 2267465 29977937 ~ 29990810 (-)
AMCG00009241 NA other upstream 2539399 30249871 ~ 30256499 (-)

Expression


Co-expression Network