AMCG00009186 (LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689)


Basic Information

Item Value
gene id AMCG00009186
gene name LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28385083 ~ 28390096 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009186
GTGACTGTGGTTTAACGTATTAAAGAAACGCCTCTATATgctttctgttttaatgtgcaGGACACGTGCACCCGCAATCAGTAGAGCGCGGCCCCGACATCACATTGCGCGGTCGCGAGCACTGTTGACCTCCCGGGAGCGCGCTTTTTAGCGAGCACTTCCAAGATGGCCGCTGTGTGATGAGAGGAAGttctctGACGCGGAGTTGGTGCCTGCTATAGAGTTGGTATGAGCCCTGACTCCCAAGTGCTGTTGGGCATATTGTAGATGGCTTTGAAGGGTCTGATCGCCTTCACTCCAGCTCAGGAGGAGGGAGGCAGGCTGGTAACCGGAGGGGCTGTTAGGAAGGCTGTGAGGAAGCAGGGAGATGGGCTGAGCGGAGAGGAAGCCAAACTCTTCTACGAGAGTCTTTTGCAGAGTGAAGAAGGAGGGAGACGACCAGACAAAAGACGGCATGTAGAGAAGGGGAAGAGAAAAGAGCGAGTGAGACCCCCCCAGCGGCCAAgtgcaccaccaccaccaccggtCCCAGCAGCGCAGGGGCGGGATGGGAACAGGCTGCTGAAGTGCGCCCAGGAGGGGGACTTGCGTGGTCTTCGCGAGCTGCTGCAGAAGCGCGGCTGTGATGTTAACTATCAGGATGGCTATTTCTGGACAGCCATGATGTGTGCTGCCTATGCTGGGCAGAGGGGCGCAGTACGGTACCTGCTCCAGCAGGGGGCGGCCTGGGTGGGTGTGGTGGATACTCAGGGCCGTGATGCGAGGGACCTGGCTGAGGAGGCAGGGCACAGTGAGGTGGTGAGAGAGCTGGAGGACTACCAGGGACAGCCAGAGCCTTCTGCACAAACAGAAAGTGTGTCAAATCCAGAGTCGCGCTGGTGCGATGTATGCCAAGCGGAGTACAATGATGAAGAAGAGAGGCACTGCAGCTCCACCCTGCACCAATTCAGCCTTCGCCGtccaccccccacaccccactACTGCCTGCCCCCTAGCAATGTGGGGTTCCGGCTGATGGTACGTGAGGGCTGGGACCCTGGGACGGGGCTGGGGCCACAGGGCGTGGGCTGCAAACAGCCTGTCCGCACAGTACTAAAGAGGGACCAGAAAGGGCTGGGGTATGGGCCTGCCTGTCAGCCCAGAGTCACACACTTCAGGCCCCGGGATCCCGAGGCAGTGCAAAGGGTCCCCAGCGCCCGCACTGAGAGAGTAACCACTATGAATcgcaggcaggagaggaggaaggaggagagagaccgGGCTTGGGAACGGAACCTGCGGACCTATATCGACATCTGAGTACTGACCTCTCACTCTACACACAATCTTTGAACTCTAACAATAACATGAACTCTGCTGGACTGTGAGATGATGCATCTTTTCATTCTCTAAACAATGAGCACAAATTAGCAGTTTATTTGAGTAACTTTATTTGTTGCTGAATATTGTAcagttattaaatgttttgaaagtgtaattttgttttctaatttataGTCACTGTGTGCACTTATGTTGGTTTTATTGGTTAATTATAATGCCTGGCCACCCCAACATTTCACTTTTCCATCATCAAGTTTCCTTACTGTAAAAGAAGAATTCAGAGCTAAAGATACATACAATAATTGTAAGCAGGGAAATGGGAGAATttttagtgtatatttttattagcaacaaaacaaaacacatccaAGCAATTCTATTTACAGCCCAGTTTTAAAGCAGTAATAAGTGTGTTCAGTAGAGAAACCACTGCCAGCAGCCCAGCTTTTGGAGCACAAAATCCTGAAGATTGTGCAGGTTCAGTGTTCACTTCAAATCACGTCAATAGGGACTCTTCATAATGATGCCTATCATATTCTTCCAAGGTTCAGTAACACAGTGTAACTCATGCTCTGCACAAGGGGAGGCAGGGATGTGTGGAGGAGGG
>TU68988
tccaAGCAATTCTATTTACAGCCCAGTTTTAAAGCAGTAATAAGTGTGTTCAGTAGAGAAACCACTGCCAGCAGCCCAGCTTTTGGAGCACAAAATCCTGAAGATTGTGCAGGTTCAGTGTTCACTTCAAATCACGTCAATAGGGACTCTTCATAATGATGCCTATCATATTCTTCCAAGGTTCAGTAACACAGTGTAACTCATGCTCTGCACAAGGGGAGGCAGGGATGTGTGGAGGAGGGTCAGAAAGGCCTTTGGCGGGAGCGAGCTTGGATCATTCCTAGCACGGAGAAAGCACTTGCCGCAGCCGTCACAAAACTAATAGCACCAATTGCACGGGATGCCTAGGAGAAGGAAAGGGGGTTAGCGAGAAGGTGTGGGAGGGAGATAGATAGTGTTGGGAAAAGAGAGAAGATGAGCGGGAAAGAGGCACAGCTaagaaggaagagagagaggtctgATTACCGAGGTGTGTATAAGGTGTGGGGCTCACCTGGTCTGACACGCCCTCTCCGTAACGCAGCAGCGTGACGAAGTGTTCGCAGTTGTTGCCCAGCAGGTCATATGACACCTCCTGCCCAATGAGGAACTGTGCGCGGTTGATGATGTCACAGACAGGCAGGGGTGTGTACTTGTCGTCGTATTTGTTGTTGACGCAGTAGGAGTCGTCGCCTACGACCTCCTTCAGGAGCTGCATGCGCACCACTGCCTTCCTGCTGAACACCGACTTTGCACTGGAGAGCGCTGCGGCCTGGCCCTCGTCTATCAGCACAGGGAGTGTAGTCAGCACATCACTCTACACTGCTTCACTGTAGATTCATACATCCGTCTCCGTCGGACCAACACCTCACTTTGCAACTCAGCATCAACCCTGCAACTTGGACAGGAGTATGACATGGAGTTAATAGCCTTTGTGCCCGTATCTCTAGTTCCTTGTCTTTGCTTAAGTATTCCTCTATTCGACTGCATGTGTTTCTCAGAGGGCACAGAAAACTGACTTAGAGGAGAAAATGTACGGTTTGATCTTTCGTGGTGTGAAGGCAGTGGAAAGTGAGCTGTTTTCTGAGCTGCTGTCCTGAGGGACATACCACAGTGCCAGAGAATGCTGGAGAGAAGTGACACAATGGCTGCTTTTTCTGTCTACATGTGAGGCCCTGCAGAACACTCCAGGACTGGACAATATAGGCATGCAGGTACAATACAGACTGTAGAGAACAATATACACTAGCCTATGTACCACAGAAAGACACAATAGCACCAAGAGAATggagaaacacacagaacatGCCTCTGCCAGGGCTGGTATCTTACTTTGGTTCAGGGTGACAGTTTCTCTCAAATGTTTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009186 True 1930 mRNA 0.52 3 28387363 28390096
TU68988 False 1348 lncRNA 0.49 2 28385083 28387604

Neighbor

gene id symbol gene type direction distance location
AMCG00009179 NA coding downstream 1560 28380948 ~ 28383523 (-)
AMCG00009178 mfsd8,LOC106510830,LOC107086866,LOC108234272,LOC102791428,LOC101485663,LOC102289364,LOC107392755 coding downstream 6214 28364278 ~ 28378869 (-)
AMCG00009174 NA coding downstream 586433 27791373 ~ 27798650 (-)
AMCG00009171 NA coding downstream 656881 27720870 ~ 27728202 (-)
AMCG00009172 NA coding downstream 674611 27696730 ~ 27710472 (-)
AMCG00009185 NA coding upstream 315 28390411 ~ 28401946 (-)
AMCG00009183 NA coding upstream 18833 28408929 ~ 28445500 (-)
AMCG00009182 NA coding upstream 56328 28446424 ~ 28455131 (-)
AMCG00009184 hdlbp coding upstream 73697 28463793 ~ 28480382 (-)
AMCG00009197 stk25b,stk25,LOC107585675,LOC107722570,LOC107693719,LOC107589848 coding upstream 192129 28582225 ~ 28599842 (-)
G55153 NA non-coding downstream 513822 27871002 ~ 27871261 (-)
G55026 NA non-coding downstream 857589 27526047 ~ 27527494 (-)
G55025 NA non-coding downstream 859104 27525686 ~ 27525979 (-)
G54978 NA non-coding downstream 962405 27420818 ~ 27422678 (-)
G54914 NA non-coding downstream 1350867 27033152 ~ 27034216 (-)
G55268 NA non-coding upstream 98555 28488651 ~ 28505796 (-)
G55326 NA non-coding upstream 331444 28721540 ~ 28727970 (-)
G55333 NA non-coding upstream 365202 28755298 ~ 28755633 (-)
G55359 NA non-coding upstream 453377 28843473 ~ 28893883 (-)
G55404 NA non-coding upstream 665617 29055713 ~ 29057241 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 766911 27613598 ~ 27618172 (-)
AMCG00009151 NA other downstream 1049352 27314317 ~ 27335731 (-)
AMCG00009148 NA other downstream 1231608 27110996 ~ 27153475 (-)
G54821 NA other downstream 1588429 26793541 ~ 26796654 (-)
AMCG00009121 NA other downstream 1852673 26522633 ~ 26532410 (-)
AMCG00009215 gpr17 other upstream 667845 29057941 ~ 29063030 (-)
AMCG00009229 ccd50,LOC106613514 other upstream 1270864 29660960 ~ 29704929 (-)
AMCG00009235 NA other upstream 1587841 29977937 ~ 29990810 (-)
AMCG00009241 NA other upstream 1859775 30249871 ~ 30256499 (-)
AMCG00009265 NA other upstream 2209378 30599474 ~ 30657612 (-)

Expression


Co-expression Network