AMCG00009192


Basic Information

Item Value
gene id AMCG00009192
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28593147 ~ 28596450 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009192
CGCAAATCTGGGCAGACCTGCGGAAATTTGCGCCTCAAGAACGCGACCTCTGTCCTGGTGTTTTTCTCCAACTGCTTGCCGTACTTGAATCACGGTGGATGCCGCGGCATGGGAATGAGCTAATAATCATGTACCTAAGCAAGAACCTTTGCGGATTAATGGACTCGAAAGTAACTGTTAATACCTGTAACCTGATCCGCTTTAGGAAAGAGGCAGTGggacagaaagaaaggaaataacGCGGCGAGGAAGTCCAGGTAACCCTTCCACACGCATGCAACACCTTGTCACCCCGTTTAAACCTGCGAGTCCTGCCGTTGAAACTGATTCGCGCTCGGTGGGTCCGGGCAAGGATTTGACCCCCCGAGCCTCCGAGTCTGTCCCCCTGGCCTTACCTGGTTCCGCAGGTCCCGGAGAGACCCTCCACATAAACACAGCCTCCCGTTCTGTCACTCCGGGCTGTTTTCGGGTCCGATTCGCCCCCTCGAGGCTCCCGCAGCTGCGCGACAGTGTTACGTCTGccaCAATTGACAGGCTGAAGAAAAGAGATATTCCTGCTTACAGAAGCTTCTCAGCCCACGTTTTCCTGGGAGCTGCACAGCCAGGCTGCGTAACACTGTCGAGAGGAGAGGGGAGCCCTGAGGCGAGGGAGGGAGTCAGGGGCTACTGGAAGAGCTGAGGGTTGGGCATTCCTTCAGCAAGCCCAGGCACCGATCTCTGTCTTCAGGGAGGGTGGAAGGTGGAAGGGTTGCTTTATGAAAAGTGATTATTATTCAGTCATCTGTTGGAGGTGTTTtataaaccttttttgttttccttgttgcCTGTTAGGCTATATCTCTTACAAATATGCACATCTAGATTTACACAGAAATCAAGCTTGTTTTACAACTAACAGGTATCTCTGTTTTTTCAGAGCTGAATGGTCAAATTTGAATATCTACAGCTGGCACTACTTCCTGACTCTAATTTCTAGAGAAACAGTGAGTCTCACATTCTAACCTCTGTTCCTTAGAAACTTACAGCACCCTGAACAGGAAAACTCCTGTACCACTACACCCACGCCTGTAATATTATGGCAACTACTTACGAGAACTCAAAAGAGGTCCTTGAACTGATTCCCTTTGTTGTTAATTTACAATTCAGCTTTAATGGTTTCACtttgatgtttctttttgtaattgGCCGACTTCAAAAACtcagctgtaaaaaaaacaatataaatttacAAGGAACTAGCTGTTAAAAGGTGTCAGGTCTTGCAGACTTCATCTGCCTACTGGAATTACAGAACAGTCTTGTCACCAGGTAGATGGATCCTTGTGCTCTTCTACAGAGAGGTGGAATAACTGATGTGCCTAGTTATTGTCAATTtctttctacatttaaaaaaaaatgtttcccccCTGTTATCAATGCCCAGTGTTCTAAGCATTGGCTACTCTGGCAAGGTTTTATGTTTTAGATAAAATGTTCCTGCAAAGACTAATGAAAAACCTTTGTGTGTGAAACAAAACCTTCACCATCTCTACATTAAAATATCCGCTAAGCAAGGACAATGCAGCCGATATAAACTTCACTGCAGGAGGGCAACAGACCAGCCctggtgggaaaaaaaaactcctgcAGTGGTTTGTGGAGATCTTGAAAAT

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome
ko00970 Aminoacyl-tRNA biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009192 True 1652 mRNA 0.46 3 28593147 28596450

Neighbor

gene id symbol gene type direction distance location
AMCG00009190 farp2 coding upstream 29039 28544328 ~ 28564108 (+)
AMCG00009189 NA coding upstream 77296 28510563 ~ 28515851 (+)
AMCG00009188 sept2,LOC102290758,LOC102196852,LOC101486671 coding upstream 87351 28489056 ~ 28505796 (+)
AMCG00009180 NA coding upstream 132993 28452750 ~ 28460154 (+)
AMCG00009181 LOC101468118,LOC100701835,LOC102794991 coding upstream 187703 28404123 ~ 28405444 (+)
AMCG00009187 bok,LOC106574198,LOC106560644,LOC107733256,LOC107752647 coding downstream 3468 28599918 ~ 28610586 (+)
AMCG00009191 atg4b,atg4a coding downstream 22743 28619193 ~ 28627169 (+)
AMCG00009199 LOC108241196 coding downstream 80147 28676597 ~ 28723790 (+)
AMCG00009201 NA coding downstream 132946 28729396 ~ 28735853 (+)
AMCG00009200 espnl coding downstream 139833 28736283 ~ 28755174 (+)
G55257 NA non-coding upstream 127921 28464562 ~ 28465226 (+)
G55205 NA non-coding upstream 209644 28383000 ~ 28383503 (+)
G55204 NA non-coding upstream 211848 28380980 ~ 28381299 (+)
G55203 NA non-coding upstream 212392 28380392 ~ 28380755 (+)
G55202 NA non-coding upstream 212777 28379515 ~ 28380370 (+)
G55300 NA non-coding downstream 31213 28627663 ~ 28630297 (+)
G55308 NA non-coding downstream 35905 28632355 ~ 28633332 (+)
G55357 NA non-coding downstream 301526 28897976 ~ 28898693 (+)
G55394 NA non-coding downstream 432868 29029318 ~ 29031478 (+)
G55461 NA non-coding downstream 588471 29184921 ~ 29185184 (+)
AMCG00009164 NA other upstream 967136 27613583 ~ 27626011 (+)
AMCG00009129 NA other upstream 1796379 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 3005532 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 3099574 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 3675284 24898116 ~ 24917863 (+)
AMCG00009204 NA other downstream 170004 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 332442 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 507158 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 574873 29171323 ~ 29174731 (+)
G55573 NA other downstream 1311461 29907911 ~ 29911564 (+)

Expression


Co-expression Network