AMCG00009208


Basic Information

Item Value
gene id AMCG00009208
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29103608 ~ 29108227 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009208
GCTAGACCAGATAAGCCCTCCTCTTATTTAACGCTTCGAGTGAAACCCGAGTTTAATATAATGTGAAATGCTCATTGGATTTTTATATTAACAGTAGTCAGGGCGTATTTTACCATGTGATATGacaattgtttcctttcagtttgAAATCGAGTAAAGGTACATATGAAGAGCATGTTTGTACTTTCTAAATTGGTTTctggacaacaacaaaaaggggAAACACCGCTAATCAGGAACCCGGAAACATTTGTTGTGCAACACTGATACAAAAGTTGCTGAAGTAAAGAACATTTGTATTGTCTGATGTGATTAGTACTGCCTTTGGATCTTAAATCAAGAGCCGGTTTACTGTATAGTGCATGGCTAAAATGGAGTGGAAAGATTTCTGGACCCGTAGAAAATTAGAGGAACTTTGCAACATGTGGGAGGCGAAGCCGTCTCTGTACAACCCTAAAGTACGCGAATATCACGACAGATGGTGCAGAAAACACGACTCCGAAGAGATCGCGCAGACTCTGGGTACAACGGGACATGaagtgcttaaaaaaataaaaaatctcaaaaCCCAATATGCCCGGGAGCAGCGAAAGGCAGCCAGTGCTAGGAGCGGCAGCGGAGAAGTGTCCCTGTCGAAGTGGTATCTGCTCCCGCTGTTGAAATTCCTGGATGTGTTAATTGACTCCAGTCCAAAGGCTGCCCATCTCGGTGGGTACGAGATACCGGATCATAACAGTACCCACCAGGCTGCAGATGAAATAAATGTGGAAGTGTCAGAAGACAAGCACGATGTGAGTGAAGAGGACAGGGACGCAAAAAGGCCTCGGCTATGTTTACCAAAACGACCAACGAACAGTGACATCCATGTCAGATTAGCCCATGACCGGAAAAGAATAGCGTGCGAGAAGACCTTCTTTGTCACGGCTGCTTCATACATGAAATCGTTGTCGGATAATATTGAAAAGGCTAAGAGAGTCTCCCAAGATGATGCCTTTGACATTTTTGGCAAATACGTGGCGTCGGAACTGAGACTAATGGAGGATGCCCAAATGCAGAAAATGGCAAAGCTGCGTATCCAGCAGGTCTTGATCGACGTCCAGTCAAGTTCAACCAAATCCCAGCTTCCTGTACCCGTGCACGTGCAGCCTCCGTGTGCCGCCAGTGCCAGCGACAGCCCTGCTCTTTCAGTGGGCCCGGTTATTTCTTCAGAGCCTCCCTTTACAAACAACTGTGCTGAAACGGACATTAAACTGAGTGAGATGGAAGTGAAAATCTTAGATCACTCCTATCCCTCAACCTTTCACTACGACACATAGGTTTCAGTAACTACTACATCAGGAACAATCAGGGTCATGTATGCTGTGCTTTGGAAATATGTTTTGGGTTACGTAAGatattccccccaaaaaatacacatttactgCAATAGTTTtggaatatatatgtaatatgtaagtGTGAAAGTCTATATATGCACTATATATACCAAGGAGGCAATAAAGAAGTGAGGTCCTATTTACAGTAAATCTGTATCtaattagaaaatgtgtatgtCATATAAATActaagtaaaaaatacaaaagtgtgGTATAAGGAGCAGGTGGAGAGTCAAATCTTGAAATATCCAGAGACTTTGTGGAGCTAACAGTTCTGTTTTTACTGAAAAAGatttctttgtattgtttttattaatactgtCCAATAAAACATTAGAtgtaatcaataaaacaaaaacaaagttctaaaatgccaaaaatttaaatatctgtttCTGGTCTAAGTGGAGGGGCTGTAGGGTCATGGAAATAGCCTAATGCTACCCTTTAagttataaaatacacaaatacagtattCTGAAAAGCAGTATATTTCACGAATATATGTGATCAATGCAGCAAACAATCTGCTACATTTAGCATGGTCTTTTAAGATGCACCGCTAGATGGCAGCATAAATCTTTAAAAGTATAGTGAGCAGACAGTTTTCTAAACCCCCAACCATTCTTAGTGTTTATGCGTTATACCTTATTTGGTATTTAATGTTACCTaaagtatattttgtttaaatatgacATGCTTTGAAATATTTCTATGGAATAGCACATTCTGATAcagatgacattttaaataacttggtTAATTTATTCTACATTTTCCAGTTACCCAATTCACAGTACATATgtgcaattcaaatgtaaaaacaaaacaaaaatggtgcCAGATAAGAACTATTTTGAAAAAGCTGTGGAAATTGTTTTTGGGTTTAGCCATGATTTGCACAAAATTATGTGCTGAGAGTCAGTCATCTGTCTCCCAGTAATACTCAGTGCCTCAGTCAACAGAGGTCTTGACTACTTGAATGAAGTGGCTGTGATGGTGGTGAAGTTGTTCTATGCATGGTACACTAATACACAGTTTACCTTGTAATGTTTGGATCTTTgagtaaatataaaacaatctgtCAAACCACCACATATTCccatataaaaacatactttgtAAGTGCTTTATATCTCACAACAAAGCCCTTCAATATTATGAAAACCAGCTGCAGCTCAGGAATTTAAATGGtaatattttttagaaatgtgCAGCATTTGTGGTATGTAAGCATCTGTCAAAGAAGAATGCAGATGTTGGCATTGGGCCTTAAAATACTTATAGCAGTGCTATTTATTCATAAAGgattgtttaaatacataccatcattcagttttgttttctttataatgtTCTAGTCCCACTCATTGTTGGCAAACTGTGATTCTGAGCTATTTGCTTCTGAATTATCTGAATTATATGAATTAATCAGATACAGATGTGTCATGCCAAACACTGAAGTGTCACAATTATTGTTGTGGCAGGAAGCTTTCACACCTAAATAAGGATTATAaagatttttcaaatacatgcGCATTAGAGGACAATTATTTGCATTATCTTCAAATAAAAGGGTGTATAAACgtcgaatgttcttctttgtgagaGTACATTGATTTGTCCAAATGCTTTTAGCTGATTTATGTATTGCCAGATTTTctcaatattttcaaatgacatgCAGATATTTGGCC
>TU69266
GCTTCGAGTGAAACCCGAGTTTAATATAATGTGAAATGCTCATTGGATTTTTATATTAACAGTAGTCAGGGCGTATTTTACCATGTGATATGacaattgtttcctttcagtttgAAATCGAGTAAAGGTACATATGAAGAGCATGTTTGTACTTTCTAAATTGGTTTctggacaacaacaaaaaggggAAACACCGCTAATCAGGAACCCGGAAACATTTGTTGTGCAACACTGATACAAAAGTTGCTGAAGTAAAGAACATTTGTATTGTCTGATGTGATTAGTACTGCCTTTGGATCTTAAATCAAGAGCCGGTTTACTGTATAGTGCATGGCTAAAATGGAGTGGAAAGATTTCTGGACCCGTAGAAAATTAGAGGAACTTTGCAACATGTGGGAGGCGAAGCCGTCTCTGTACAACCCTAAAGTACGCGAATATCACGACAGATGGTGCAGAAAACACGACTCCGAAGAGATCGCGCAGACTCTGGGTACAACGGGACATGaagtgcttaaaaaaataaaaaatctcaaaaCCCAATATGCCCGGGAGCAGCGAAAGGCAGCCAGTGCTAGGAGCGGCAGCGGAGAAGTGTCCCTGTCGAAGTGGTATCTGCTCCCGCTGTTGAAATTCCTGGATGTGTTAATTGACTCCAGTCCAAAGGCTGCCCATCTCGGTGGGTACGAGGTGAGTGTAACCCGTATGCCCGACTAGTGCGCGGCATTATCCCTAGGAGCAGAGCCAGCGCATGCGTCGTTGCGAATGAAGCTGGCGTCCTGGCGGCGCAGtgctgcagaattccaccgatccgattggcggagcagcgcagacctgcggaGAGTAGAAGACGATACACAGTCTGCACAAATGGCGGGGCAttgttaaaatagttttctcGCTGGGCCATATTCCAGGTTGGTCGGTATCCTTTTTGAAGGTTGTTTGGCGGCGAACTGTTGTGCTTTGTTCACAGCTGAGGCGTCTGTTTTTAGGAGCAAACCCAACCGTGTTAGTCGGGCCTTGCAACATATCTGAAGCAGAAGCGGGTTGTGGGCGTAATGGTCTGTAatcgtgttgttgttttttaagtgtgaCTTGATTTACATGTGTAAATGGTATTAAAAGAGAAGGAAACCACTTCTGTCTGCCCTTCTCTTTGCAGCAGACTAATTGTCAAAAACCTAACTGGAAACACAATGCAAACCATAGGACACAGTTTAATTCATTGGGATTGGAAGCAGCAAAAACTCTATGAACTGATATAATTCTTCAACTGAACTGACCATACAGTGGAAATGGACTTCTTTAGCGGTTTTAACATTATAACTTCACATGTAAATACTAGCCAAATAGGGACAAGACATGTGGGACACATCTGAATATCAATTACAATCAATTGGTTTCTAATACAATAGAAACTTTGTGTTAATGAACAgagctttctttaaaaaagcagCAAAACTTAACACGTTGgcggaaaaaaaaagcaaaaatgcaagctggaaaaaaagcttttatttacCAGTACCCTTGCCAAAAAATAAGCCTGCCATGACCTGCATTTGGCATATACCAGCAATATTGCAGCAACCTGTAATTGGAAAACTCACAATTTGTCATGCAAATTAGGTTGCTGCAACCTTTCTCTTGCAATCAGTTATGAAAAAGTTATCATTGTTATTCACATTTCACGTGAATAACGATAACCTTTCAGCAGGTCAAACTACTGAGAAACAGTTTAGAATGATTAAGTatggtggggaaaaaacaagtgTCGATTATGTGTGACAGCAGTCGCTTGCTTCTCTGGTGAAAGTGGCAACCGAATGAGCCGATCCACACTGCTGTCCTGGCTCAACTCAGGACTGTGGGTGCCGGGATTAGAGGGTAGGCATCAGCCATGGACACTGATCTAAATGGACTTTAAGCACTCCTGGACTAcccaaagttattttaaatagagtAGTGCAGGACTGGTACTAAACAAGGTCTGTGGAAACCAGCTTTTAAAGTAAGTGAGATGATGTCTTgcgttttccttttaaaatctgtcctgttgttttgctgtttgAACCTTCCCAtatgtgaatacattttctgtcataCATTTCCAGATACCGGATCATAACAGTACCCACCAGGCTGCAGATGAAATAAATGTGGAAGTGTCAGAAGACAAGCACGATGTGAGTGAAGAGGACAGGGACGCAAAAAGGCCTCGGCTATGTTTACCAAAACGACCAACGAACAGTGACATCCATGTCAGATTAGCCCATGACCGGAAAAGAATAGCGTGCGAGAAGACCTTCTTTGTCACGGCTGCTTCATACATGAAATCGTTGTCGGATAATATTGAAAAGGCTAAGAGAGTCTCCCAAGATGATGCCTTTGACATTTTTGGCAAATACGTGGCGTCGGAACTGAGACTAATGGAGGATGCCCAAATGCAGAAAATGGCAAAGCTGCGTATCCAGCAGGTCTTGATCGACGTCCAGTCAAGTTCAACCAAATCCCAGCTTCCTGTACCCGTGCACGTGCAGCCTCCGTGTGCCGCCAGTGCCAGCGACAGCCCTGCTCTTTCAGTGGGCCCGGTTATTTCTTCAGAGCCTCCCTTTACAAACAACTGTGCTGAAACGGACATTAAACTGAGTGAGATGGAAGTGAAAATCTTAGATCACTCCTATCCCTCAACCTTTCACTACGACACATAGGTTTCAGTAACTACTACATCAGGAACAATCAGGGTCATGTATGCTGTGCTTTGGAAATATGTTTTGGGTTACGTAAGatattccccccaaaaaatacacatttactgCAATAGTTTtggaatatatatgtaatatgtaagtGTGAAAGTCTATATATGCACTATATATACCAAGGAGGCAATAAAGAAGTGAGGTCCTATTTACAGTAAATCTGTATCtaattagaaaatgtgtatgtCATATAAATActaagtaaaaaatacaaaagtgtgGTATAAGGAGCAGGTGGAGAGTCAAATCTTGAAATATCCAGAGACTTTGTGGAGCTAACAGTTCTGTTTTTACTGAAAAAGatttctttgtattgtttttattaatactgtCCAATAAAACATTAGAtgtaatcaataaaacaaaaacaaagttctaaaatgccaaa
>TU69269
GCTTCGAGTGAAACCCGAGTTTAATATAATGTGAAATGCTCATTGGATTTTTATATTAACAGTAGTCAGGGCGTATTTTACCATGTGATATGacaattgtttcctttcagtttgAAATCGAGTAAAGGTACATATGAAGAGCATGTTTGTACTTTCTAAATTGGTTTctggacaacaacaaaaaggggAAACACCGCTAATCAGGAACCCGGAAACATTTGTTGTGCAACACTGATACAAAAGTTGCTGAAGTAAAGAACATTTGTATTGTCTGATGTGATTAGTACTGCCTTTGGATCTTAAATCAAGAGCCGGTTTACTGTATAGTGCATGGCTAAAATGGAGTGGAAAGATTTCTGGACCCGTAGAAAATTAGAGGAACTTTGCAACATGTGGGAGGCGAAGCCGTCTCTGTACAACCCTAAAGTACGCGAATATCACGACAGATGGTGCAGAAAACACGACTCCGAAGAGATCGCGCAGACTCTGGGTACAACGGGACATGaagtgcttaaaaaaataaaaaatctcaaaaCCCAATATGCCCGGGAGCAGCGAAAGGCAGCCAGTGCTAGGAGCGGCAGCGGAGAAGTGTCCCTGTCGAAGTGGTATCTGCTCCCGCTGTTGAAATTCCTGGATGTGTTAATTGACTCCAGTCCAAAGGCTGCCCATCTCGGTGGGTACGAGGTGAGTGTAACCCGTATGCCCGACTAGTGCGCGGCATTATCCCTAGGAGCAGAGCCAGCGCATGCGTCGTTGCGAATGAAGCTGGCGTCCTGGCGGCGCAGtgctgcagaattccaccgatccgattggcggagcagcgcagacctgcggaGAGTAGAAGACGATACACAGTCTGCACAAATGGCGGGGCAttgttaaaatagttttctcGCTGGGCCATATTCCAGGTTGGTCGGTATCCTTTTTGAAGGTTGTTTGGCGGCGAACTGTTGTGCTTTGTTCACAGCTGAGGCGTCTGTTTTTAGGAGCAAACCCAACCGTGTTAGTCGGGCCTTGCAACATATCTGAAGCAGAAGCGGGTTGTGGGCGTAATGGTCTGTAatcgtgttgttgttttttaagtgtgaCTTGATTTACATGTGTAAATGGTATTAAAAGAGAAGGAAACCACTTCTGTCTGCCCTTCTCTTTGCAGCAGACTAATTGTCAAAAACCTAACTGGAAACACAATGCAAACCATAGGACACAGTTTAATTCATTGGGATTGGAAGCAGCAAAAACTCTATGAACTGATATAATTCTTCAACTGAACTGACCATACAGTGGAAATGGACTTCTTTAGCGGTTTTAACATTATAACTTCACATGTAAATACTAGCCAAATAGGGACAAGACATGTGGGACACATCTGAATATCAATTACAATCAATTGGTTTCTAATACAATAGAAACTTTGTGTTAATGAACAgagctttctttaaaaaagcagCAAAACTTAACACGTTGgcggaaaaaaaaagcaaaaatgcaagctggaaaaaaagcttttatttacCAGTACCCTTGCCAAAAAATAAGCCTGCCATGACCTGCATTTGGCATATACCAGCAATATTGCAGCAACCTGTAATTGGAAAACTCACAATTTGTCATGCAAATTAGGTTGCTGCAACCTTTCTCTTGCAATCAGTTATGAAAAAGTTATCATTGTTATTCACATTTCACGTGAATAACGATAACCTTTCAGCAGGTCAAACTACTGAGAAACAGTTTAGAATGATTAAGTatggtggggaaaaaacaagtgTCGATTATGTGTGACAGCAGTCGCTTGCTTCTCTGGTGAAAGTGGCAACCGAATGAGCCGATCCACACTGCTGTCCTGGCTCAACTCAGGACTGTGGGTGCCGGGATTAGAGGGTAGGCATCAGCCATGGACACTGATCTAAATGGACTTTAAGCACTCCTGGACTAcccaaagttattttaaatagagtAGTGCAGGACTGGTACTAAACAAGGTCTGTGGAAACCAGCTTTTAAAATACCGGATCATAACAGTACCCACCAGGCTGCAGATGAAATAAATGTGGAAGTGTCAGAAGACAAGCACGATGTGAGTGAAGAGGACAGGGACGCAAAAAGGCCTCGGCTATGTTTACCAAAACGACCAACGAACAGTGACATCCATGTCAGATTAGCCCATGACCGGAAAAGAATAGCGTGCGAGAAGACCTTCTTTGTCACGGCTGCTTCATACATGAAATCGTTGTCGGATAATATTGAAAAGGCTAAGAGAGTCTCCCAAGATGATGCCTTTGACATTTTTGGCAAATACGTGGCGTCGGAACTGAGACTAATGGAGGATGCCCAAATGCAGAAAATGGCAAAGCTGCGTATCCAGCAGGTCTTGATCGACGTCCAGTCAAGTTCAACCAAATCCCAGCTTCCTGTACCCGTGCACGTGCAGCCTCCGTGTGCCGCCAGTGCCAGCGACAGCCCTGCTCTTTCAGTGGGCCCGGTTATTTCTTCAGAGCCTCCCTTTACAAACAACTGTGCTGAAACGGACATTAAACTGAGTGAGATGGAAGTGAAAATCTTAGATCACTCCTATCCCTCAACCTTTCACTACGACACATAGGTTTCAGTAACTACTACATCAGGAACAATCAGGGTCATGTATGCTGTGCTTTGGAAATATGTTTTGGGTTACGTAAGatattccccccaaaaaatacacatttactgCAATAGTTTtggaatatatatgtaatatgtaagtGTGAAAGTCTATATATGCACTATATATACCAAGGAGGCAATAAAGAAGTGAGGTCCTATTTACAGTAAATCTGTATCtaattagaaaatgtgtatgtCATATAAATActaagtaaaaaatacaaaagtgtgGTATAAGGAGCAGGTGGAGAGTCAAATCTTGAAATATCCAGAGACTTTGTGGAGCTAACAGTTCTGTTTTTACTGAAAAAGatttctttgtattgtttttattaatactgtCCAATAAAACATTAGAtgtaatcaataaaacaaaaacaaagttctaaaatgccaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009208 False 3074 mRNA 0.38 3 29103608 29108227
TU69266 True 3150 TUCP 0.42 2 29103640 29106908
TU69269 False 3047 TUCP 0.42 3 29103640 29106908

Neighbor

gene id symbol gene type direction distance location
AMCG00009214 LOC106599142 coding upstream 1531 29075081 ~ 29102077 (+)
AMCG00009202 NA coding upstream 83716 29014392 ~ 29019892 (+)
AMCG00009206 NA coding upstream 176780 28910313 ~ 28926828 (+)
AMCG00009203 ryk coding upstream 210564 28867586 ~ 28893044 (+)
AMCG00009205 NA coding upstream 267196 28802969 ~ 28836412 (+)
AMCG00009221 NA coding downstream 200629 29308856 ~ 29309773 (+)
AMCG00009218 NA coding downstream 258411 29366638 ~ 29402226 (+)
AMCG00009219 LOC100694679,LOC102204076,LOC108271779,LOC105925372,LOC102787755,LOC102295835,LOC101474685 coding downstream 308209 29416436 ~ 29419290 (+)
AMCG00009225 NA coding downstream 353258 29461485 ~ 29470524 (+)
AMCG00009224 NA coding downstream 376316 29484543 ~ 29487155 (+)
G55394 NA non-coding upstream 72130 29029318 ~ 29031478 (+)
G55357 NA non-coding upstream 204915 28897976 ~ 28898693 (+)
G55308 NA non-coding upstream 470276 28632355 ~ 28633332 (+)
G55300 NA non-coding upstream 473311 28627663 ~ 28630297 (+)
G55257 NA non-coding upstream 638382 28464562 ~ 28465226 (+)
G55461 NA non-coding downstream 76694 29184921 ~ 29185184 (+)
G55463 NA non-coding downstream 78467 29186694 ~ 29187955 (+)
G55487 NA non-coding downstream 350194 29458421 ~ 29458743 (+)
G55512 NA non-coding downstream 533262 29641489 ~ 29641936 (+)
G55564 NA non-coding downstream 750068 29858295 ~ 29932152 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 91840 28928892 ~ 29011768 (+)
AMCG00009204 NA other upstream 304008 28766454 ~ 28799600 (+)
AMCG00009164 NA other upstream 1477597 27613583 ~ 27626011 (+)
AMCG00009129 NA other upstream 2306840 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 3515993 25584882 ~ 25587615 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 63096 29171323 ~ 29174731 (+)
G55573 NA other downstream 799684 29907911 ~ 29911564 (+)
G55591 NA other downstream 886899 29995126 ~ 29995438 (+)
G56060 NA other downstream 3053533 32161760 ~ 32165365 (+)
G56368 NA other downstream 4892569 34000796 ~ 34031445 (+)

Expression


Co-expression Network