AMCG00009212


Basic Information

Item Value
gene id AMCG00009212
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29029309 ~ 29052524 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009212
agaaaagagagcgagtcacagagagagagagagagagagaccaaaaTGACTTCAACCAGCTAGCTCGAATTCTCCCAGGTCGCTTTTGTATATATCTGGAAAAAGGCTTCAGACTACAAGGTAAAACCTGCAGAGGCTAAAATGGTAAACTTGCAGCCTTGGTACCATGGCAACATTACCCGATCGAAGGCTGAGGACCTGCTCTCCAAAGCGGCAAAGGATGGGAGCTTTCTGCTGCGGGACAGCGAATCTATTCAAGGAGCATACGCCCTCTGCGTACTataCCAGAACTGCGTGTACACCTACAGAATCTTGCCGAATGAAGAACGAAGACTTTCTGTTCAGGCCTCAGAGGGAGTGCCCATCCGTTTTTTCTCAGTGATAAGTGATCTGGTGGAGCATTACTACAAGGAGAATATGGGCCTGGTTACACACCTGCAGTTCCCAGTGCAGAAGGAGGAGGAGCGGGCAGAAGACCCCGAGGAAGAAACTGAGCCAATAAATATCCCCCCTCAGCTCCCACCTAGAAATTTCTTTCCCGTGCCGTCAAATAATGAGAGCAAGGAAGTCCAGAGTGAGCCCCCAAAAGGCACAGAACTTGTCCGACCCTCCATCTCTGAAACTTTCCTGCAGAAATTTCAGAACCTGGACACCAGCAGTGTTCCAGAAGAACACCTAAAAGCCATCCAGGAGTACTTCAAGGTATCGGTTTGTCTAGATGCAGAGATGGTTCAAAATGGGAACCCTACCCTCCCCCATTTGAAGAAGCTAACAAATGGGCTGTGCAAAAACCTGAACAGTGAAATTACACGTACTTTGCCCACTCTGGAGTTATTTCAGAAGGCATTGGATCAACAGCTCTCCCCTGGTTTAGGACGCCAAAGGAGCCAGgTTTCTGAGTCCAGTTTAGTGCCTGTCGCTTCTAGACTTGAGCAGTTAACCAAACTGCTATACTCAATAGAAGACAAGACAAAGAGTGCTGTGTTTGAGTCTGTTGGATATGATGGTGGCCATAGAAAGTCGTTGATACCTCCTGTTACCTTTGAGGTCAAATCAGATTCACTTGGCATCTCAACAAAAATGTACTTGAAGGTCGATGTTGAAGCTGGAAAAaaacGAGAAGGATTTTGTCAGCTCCTTCAGCAGATGAAGAATAAACACTCTGATAAGCCTGAACCAGACATGATTACAATATTCATAGGCACATGGAATATGGGCAATGCCAATCCTCCTTCCAACATTACATCGTGGTTCAAGTCGAAGGGACAAGGGAAGACGCGGGACGACACAGCTGACCACATCCCCCATGACATCTATGTAATCGGGACACAAGAGGATCAGctcggagagagagagtggatgGACGTTATAAAAAACACTCTGAGGGAAATCACCAACATCAGCTTCAAACCAGTGGCCATCCACACACTGTGGAACATCCGCCTGGTAGTCCTGGCAAAACCAGAACACGAGAACCGCATCAGCCATGTGTTCAGTGACAGCGTCAAGACAGGAATTGCCAATGCCCTCGGCAATAAAGGGGCGGTGGGTATTTCCTTCATGTTCAATGGTACATCGTTTGGATTTGTTAACAGCCATCTGACCTCAGGGAGCGAAAAGAAACTGAGACGGAACCAGAACTACATCAGTATCCTCCGTTTCCTCAACCTGGGAGATAAGAAGCTAAATCCATTTGACATCACCCATCGATTCACCCATCTTTTCTGGTTGGGAGATTTAAACTATCGCATTGACATGCCTTCAGTGGAAGCGGAGAACATTGTGACAAAGATCAAACAACAGCAATACCAGGAACTCCTCAGCAAAGACCAGCTCACAATTGAAAAGAAAGACTCGAAGGTGTTTTTACATTATGAGGAAGAAGAAATTACATTTGCCCCCACCTATCgctttgagagagagacacgagAGCGCTATGCCTATACCAAAGCCAAGGCCACTGGGACAAAGTATAACCTTCCATCTTGGTGTGACCGCGTCCTTTGGAAGTCCTACCCCTTGGCATATGTTGTTTGTCAGTCATATGGGTGTACCAACGACATCATGACAAGTGACCACTCTCCGGTCTTTGCGACATTTGAAATTGGAGTGACTTCACAGTTTGTCTCCAAAAACAACCCCAACAATGAATCTCAAGGTGGGATCAAATTCATGAATTGTGTAGCCAACCTCATGACAAAGTCCAAAACGAAGTTCTCCATTGAGTACCACTCCAGCTGCTTGGAATcttttgttAAAAGTTCTGAGGGAGAGAACGTGGAGCATAAAGAAGGATGTCTAAAGGTGCGATTTGGATCACAAGTGGAGCTTACTCCTATCATTTCCGACCCTGAGTATTTGCTGGACCAACACATACTCATTAGTGTGAAATCTACTGACAGCGATGAGTCTTATGGGGAAGGCTGTGTCGCTCTCCGCTCTGCCGAGTCGTCCTCCACAGACTTCATCATTTCGCTGACTCATCACGGGGAGATGACTGGCACTTTAATTGGTACCATCCAGTTGCGCACTTCAGAGGGCAAACAGACCGAGAAGCTATACGATTTTGTCAAGATAGAGAGAGACGACACTGCAGTGTCCAAGGGCAAGTCACCTCACTCCTCTCCAACTGACATCAGTAATCCCAATTATATGGGGGTCGGTATAAAAGCTGGGATTCCTTCTGATATGATGCTCGTGGGCGGCTGGAGCTATGACATGCTTCCTAAAAGTAGCCCACCAGGCGGAATAGGGGGCAAGGAGTCCTCCCCACCAAATCGCTCCCCAATCTCTCCCAAAAAGATGGGTCCAGGAATGGCTGTTCGCAGTCCTCCAGGAAAACCACCTGAACATATGTCAGAGGATGGGAGACCCCCAGAGATGTTTGACAATCCTCTGTATGGATCCAGGGAAATGCCAAAGTTATCAGGCCGCAAGGAGCAGGACTCCCAGCGGCCCAACCGCAAGGATCAGCTAACACCCCAAGATGCTTTCTTTCCCTTCCCAAAGATCCTGGAGGTGGAAGGAGAACGCCCACCTCCTGTGCCCACCCCCCGGAACCGCTCTTTTACCTACTCGGAGACAAAGCCTCCCTGCAACCTTCAGCCTCCTGGCCTTAAGAAACCGGTGGTACCATCCCGTTCTGATTGCGGCATACTGCCAAAGATTCCCCCTTCCCTTCCAGCTAAGTCACGTCCTGATCCTCCCCCCACCAAACCAAGGGACTACCGAGAGAGCTCAGAGCTGCCCAGCAAAGGCAGGCCTCGTGTAGATGGCCTTTTAAGACCCACCCAGACAGTTTCCAAGGAAGTGAATCAAGAAGCGGTTCAAGTGTCAAAGAAGGGACGTTCAGTTAAGTGAGCTCTGTTGTTCAGGCTTGGTCAAGGTTAACGGCTGCTTTCTCTTCTGGGAACAGTAAATTAATATGGACTCCATATGCAACTCCAAAGACTGGACTGAATAGAATGAAAAGACTATATCAAAATATCATAAGACCTAAGACATCTCACCAGGCCTCTTCCTACTGTTAGTAAAATTGGACCCTGCCACAGCAAGACATAGACACCAAATCCTCAGTGACTATGTATTACTTGCTATTTCTCTAGTTTCAATATCAAGTTATGAGTCtgtaataaatgcaaaacaaggtATCGAACATCAATCTATACAAAAAGtgaattaatcattaaaaacaataacaaatttcATATAATTACATGTGTATACTTACTATATAAACATCATAATCTAGTTGTAGTTATTACAAAATCTGTTTACTAAAAAAAGGCACTTCTGAAGATGCCATTTTCAATTACAGACTGTAAAAGGGAAAAGCGATGTTATGTAAGGTATCATAAGAATGTGTATTTAAGTAACTGTAGGGAATGTACATCTTTAGTACTGAAGTAACTTCATGATGTTTTCAGCCAGATGTTCAGCAAAATCAATACAGAtcaaaagttttattttgtttcaatttatttcagttattgcCCCAGCACTAGTCTTTAATTCTAATATGAATCctggagaaacaaaacacaatcaaacaatATTTCTACCTTATGGAGAGGGACCCTGCTACTGTTCTTGGTGTCTTGGCACAAGTTATTCTTTCTTCAAGTGGTTGGCAGTCATAATGTAAAAAGTAACCTGTACATCCATCCCTGTAAGTGTGTGAATTTCAGTGTCAAGGTAAATACATACTATGTCATTTCCACCAATTTGAAGGCAGTTCTGTACTGCTGCACGCTCGACTGCAATcccattaatttattgttacatTGCAAAGTGAAGGTATTTTGGGGGGACaatcaaatgtatattatagCACTTTGAAAGACACTTCACAGTTGCTGTTTTGTAGgtttcatttatgttttgtaagattCACTTTTCTGATGCTCAGATCCATTCACATACATCTTCTGAAAACCAGCTCCAGGTATACGAAAGCTTGCTATATCgcaacaattattttttgcCTGAAAATCTCACTACTGTGACTTTCTGTGGAGATGAGGTACTACCAACCCAGGTAAAAACTGTCCGCTGTTTGCTAATAGAGTATATTTCTTTGATAAAGGCGAGGAGGCATGTTTGCTCTTGATTTCTGCAGAAGACTGAGAAGTTGACAAGAGTGGAAGCTTACAAACGTTCTGTGCAGGTTGCAGACAATTTACTTTTGGAAGTAGAAAtgtgattatttgttttgcttacaGGTTGTCCGTTGTTTCATACTTTTGTAATTATAAATGCTGTTCTCTGAAAATAAagtctaaaaacaaaatatccaaaaa

Function

GO: NA

KEGG:

id description
K03084 SHIP1, INPP5D; phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009212 True 4799 mRNA 0.44 26 29029309 29052524

Neighbor

gene id symbol gene type direction distance location
AMCG00009209 NA coding downstream 5381 29020638 ~ 29023928 (-)
AMCG00009196 NA coding downstream 380236 28643287 ~ 28649073 (-)
AMCG00009195 NA coding downstream 388698 28632355 ~ 28640611 (-)
AMCG00009194 LOC106560660 coding downstream 398358 28627412 ~ 28630951 (-)
AMCG00009193 NA coding downstream 413171 28610870 ~ 28616138 (-)
AMCG00009213 NA coding upstream 11239 29063763 ~ 29089403 (-)
AMCG00009211 NA coding upstream 37531 29090055 ~ 29103281 (-)
AMCG00009210 NA coding upstream 67891 29120415 ~ 29135151 (-)
AMCG00009216 NA coding upstream 110749 29163273 ~ 29171791 (-)
AMCG00009217 NA coding upstream 135012 29187536 ~ 29197143 (-)
G55359 NA non-coding downstream 135426 28843473 ~ 28893883 (-)
G55333 NA non-coding downstream 273676 28755298 ~ 28755633 (-)
G55326 NA non-coding downstream 301339 28721540 ~ 28727970 (-)
G55268 NA non-coding downstream 523513 28488651 ~ 28505796 (-)
G55153 NA non-coding downstream 1158048 27871002 ~ 27871261 (-)
G55404 NA non-coding upstream 3189 29055713 ~ 29057241 (-)
G55488 NA non-coding upstream 406091 29458615 ~ 29458827 (-)
G55551 NA non-coding upstream 707003 29759527 ~ 29762165 (-)
G55610 NA non-coding upstream 923105 29975629 ~ 29976269 (-)
G55648 NA non-coding upstream 1183635 30236159 ~ 30236395 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other downstream 639213 28385083 ~ 28390096 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 1411137 27613598 ~ 27618172 (-)
AMCG00009151 NA other downstream 1693578 27314317 ~ 27335731 (-)
AMCG00009148 NA other downstream 1875834 27110996 ~ 27153475 (-)
G54821 NA other downstream 2232655 26793541 ~ 26796654 (-)
AMCG00009215 gpr17 other upstream 5417 29057941 ~ 29063030 (-)
AMCG00009229 ccd50,LOC106613514 other upstream 608436 29660960 ~ 29704929 (-)
AMCG00009235 NA other upstream 925413 29977937 ~ 29990810 (-)
AMCG00009241 NA other upstream 1197347 30249871 ~ 30256499 (-)
AMCG00009265 NA other upstream 1546950 30599474 ~ 30657612 (-)

Expression


Co-expression Network