AMCG00009214 (LOC106599142)


Basic Information

Item Value
gene id AMCG00009214
gene name LOC106599142
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29075081 ~ 29102077 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009214
ATGGAACCGCTCAGAGGGAGGGAAGATCCCGAGACAAATGGAGAGAAGAATCCAGCCCCGGAAGTAACTGTTGCGGTTCCCATTCTCCGAGAGCTGCTTACAGATCTGACAGTAGATCTCATCCCTAGGAGACCGAAACATACCCCAGTCAGCTCTGAGAGAAGCAGGTCTCGTCTGAGAATGGCATATCCTACGATAATATGCAGCTTTTCCAAAGGACTCATCGGTCGATCTAAGAGAGGAATAAATGTAAGTTTCACCACATACCTGCTCGAGCCCAACCAGATTGCTGAGGCGCCGGCCCTGTCGATTCCCCAGGTTCTGTTGGATCGGCTTTTTTCCAATATCCGGTTTCTCCGGAGCCTGCTGCCGGGGCTCAGGAATATCACCCATGAACCTCAGGATGATCCACCAAACCGTGACCACGGCAATGGGCCTGCAGCAGAGTCACAGCTGTCCTCATCTGCTGATAGCGGTGGGCGAGCTGCCGACTGCGGCACTGAGCCTGCAAGCGAGCGAAGCCCAGCTGGACCTGGGAGCAGGGAGAAGATAGTCTATAACAACCTGAATGATTGCATCATTGGGCTTCAGGCAGCGGATGAAGTAAGGCTGGCAGACGGTAAGTGTCTTCATGAGGGAGTCAAGAGACTGGCGGAACTGGCCACTGAGGCTGAGAGGTTTGGAGACACTCTCTACGTTGGTCATGAAGGAGCGGTTTGTCAAGCTGGCTTCCAGAGGTTTGGCATTCACCTGATGCAGGAGAGCAGCAAGCAGTTTGGTGATTTCCCAGTAGTCGTTATCACTGAACGCAAGGATCTTCATGGCCGAGCGTATGTGGGCATACTCCTTTATGTCATCCCGCCCTTCACAGCTGCACTGGTCTCGGCGATTGCGGTGCATGTTGAAGAAACAGCTGTCGGCAATGGCAAAGACGTGAGGAGGAAGCTCTCCGAGGCGCTTCTTGGACACTTTCTTGGTCCCACCGTTCTTGTTCAACAGCTTCATGACACGTTCCTTGTGGTCCAGGACCTTCATCATAGCATCACGAGCTTCAGTGATTTGATCCATTACCAGCTTACAGCGCTGCATGTTACCCTGTCAGGACAAAGGAAGACTCACCTGTATGAGCTCATTGATACAGTGCAGATCGTCATCTGCACCAGCCTTCTTTTTTGGGATCAGCCCCTCCTGGAGCGTGAAAGCGGTCGTGCCGTTGACTTCTCTTCATCGGTGCTGTTGGTCTCCATCATCTCACTTTCCTCTGTAGAGATGACATGCTGTTGTTTCCTTGGCTTCTTCCTGGGGGAGGCACCTGGTAGCATGTCTCCTGTAGAAGGCCCAAGGGAGTTCACAAGCGGGGCCACAACATTGGCCATCGATGCAGGGATTGGTGGGGTGACCGCCATGGCTGCTGGGATTGCAGACAGAGCGGCAGTGGGCTGCGAAGGAGGTGCTGCCGCCGTTAAGATGGCCGGGATTGCCTGTGAGGGGTGCTGGACAGGGGAGGGGACAGCTTGTTGCTCTGTGCTCTGGCTGGATAACGCTTCCACTGCGGCAGTCACAGGAGGAGTTATGGCAACGTGGATCTCCGGTTTTGATTTTGCCCTGAAACCACAGAGGTTCAGTATAGTGCTGTGCAGCTCAGCTCTTACCCTGCAGGCCGAGGTGATCCCGAAGCACTCCTTATGCCACTCTCCATCCGAGGGCTCGTCGCTTCACTCGCCTGGGGTGGAATTAGtttgctgctgctgctgcgagCTGATTGGTGCTGGCTGGATGCCCTGGGTGCTGATTGGTGCTGAAGTGCTGGCTGAATACCTTGTGCTCCCATTGCTGCCGGCTGGATCCCCTGGGTGCCAATCGGGGCGGTTTGTAGGCCGATGCGatctTGCAGAGAAGTTCTGTTACCTGTGTCATAGTGTGGAGCTGTGGCTTCTGGCAGGGCAGATTGATGCGAGCAGCCGTGTCTCTAGACTGGGGCTGCCGCTGGATGCTAATAGTGGCAGCGGTTACAGCTGGCCCTGGCAGTACCTGGATGTGTGGCTGGTGGATGATGTGCTGTCCCACCCCAGCATTGGGACCAGTGGCTGGCCTCAAGACTGTGCACCAATATCAGTCAACAAAGCCAAACAATTCTCAACATCAACGCGCAACTTAAAAAACACTCTTGTCAATGGTATTGTGCAAAGTAAGGTCATTCACAGAGTAGAGCAGGTCCATTCTCGTACCTGCTGTCCACTGATGGTGGCGACCGGAATAGCAGACGTGGCAGAGCTCCCTGGGCAGTGGAAGTGTGATCACGTGGATTGTGGCCTGAATCCCGGCAGCCTTCCTCACTCCCACCTGCGAACTGATTTCCAGGGACTAGGCTGGGATTTGTCCCTGGCATCTGAGATTGTCCCAAAGCAGAGGCTGGGACTCCAGACCTTGGAAACTGCTGAGAGCTCATCCTTTGACACAGATATACTGTAA

Function

NR:

description
PREDICTED: histone deacetylase complex subunit SAP130-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009214 True 2472 mRNA 0.54 20 29075081 29102077

Neighbor

gene id symbol gene type direction distance location
AMCG00009202 NA coding upstream 55189 29014392 ~ 29019892 (+)
AMCG00009206 NA coding upstream 148253 28910313 ~ 28926828 (+)
AMCG00009203 ryk coding upstream 182037 28867586 ~ 28893044 (+)
AMCG00009205 NA coding upstream 238669 28802969 ~ 28836412 (+)
AMCG00009198 NA coding upstream 312563 28756555 ~ 28762518 (+)
AMCG00009221 NA coding downstream 206779 29308856 ~ 29309773 (+)
AMCG00009218 NA coding downstream 264561 29366638 ~ 29402226 (+)
AMCG00009219 LOC100694679,LOC102204076,LOC108271779,LOC105925372,LOC102787755,LOC102295835,LOC101474685 coding downstream 314359 29416436 ~ 29419290 (+)
AMCG00009225 NA coding downstream 359408 29461485 ~ 29470524 (+)
AMCG00009224 NA coding downstream 382466 29484543 ~ 29487155 (+)
G55394 NA non-coding upstream 43603 29029318 ~ 29031478 (+)
G55357 NA non-coding upstream 176388 28897976 ~ 28898693 (+)
G55308 NA non-coding upstream 441749 28632355 ~ 28633332 (+)
G55300 NA non-coding upstream 444784 28627663 ~ 28630297 (+)
G55257 NA non-coding upstream 609855 28464562 ~ 28465226 (+)
G55461 NA non-coding downstream 82844 29184921 ~ 29185184 (+)
G55463 NA non-coding downstream 84617 29186694 ~ 29187955 (+)
G55487 NA non-coding downstream 356344 29458421 ~ 29458743 (+)
G55512 NA non-coding downstream 539412 29641489 ~ 29641936 (+)
G55564 NA non-coding downstream 756218 29858295 ~ 29932152 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 63313 28928892 ~ 29011768 (+)
AMCG00009204 NA other upstream 275481 28766454 ~ 28799600 (+)
AMCG00009164 NA other upstream 1449070 27613583 ~ 27626011 (+)
AMCG00009129 NA other upstream 2278313 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 3487466 25584882 ~ 25587615 (+)
AMCG00009208 NA other downstream 1531 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 69246 29171323 ~ 29174731 (+)
G55573 NA other downstream 805834 29907911 ~ 29911564 (+)
G55591 NA other downstream 893049 29995126 ~ 29995438 (+)
G56060 NA other downstream 3059683 32161760 ~ 32165365 (+)

Expression


Co-expression Network