AMCG00009215 (gpr17)


Basic Information

Item Value
gene id AMCG00009215
gene name gpr17
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29057941 ~ 29063030 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009215
ATGAATTCTTCAGTAGAATTCGCTTCCTTGCTCTCCAACTATTCATCCGAGAATTGCAGCGCTGAGTCGGTGGTGGAGAATGTCCTCTTTGGTGGATTCTATATCGTCGTGTTCCTTCTGGCCCTGAATGGGAATGTGCTTGCTCTGTGGATCTTCTCTCGCCAGCATGGCACCTCTTCCCCTGCCAATGTCTTCCTGTTGCACCTGGCAGTGGCTGACCTCTCCTATGTGGCGATCTTGCCTCTGCGGGCCACATACCACCTGACGGGGGGACACTGGCCTTTCGGCGAAGTGCCTTGCCGTGTGATTGGCTTCCTCTTCTATGTCAACATGTATGCCAGCATCTACTTTCTAGCATGCGTAGCCGTGGATAGGTATCTGGCGGTGGTGCATGCTGTGCGATCCCTGAAAATCAGACGTGCCCGCTACGCCCATGCCGTCAGTTTCGCCCTCTGGGTCCTGGTCACCATATCCATGGCACCCCTGCTTGCCACTCAGCAGACTATCCAAGGAGACAACGTCACCATTTGCCTGCAGCTATACCGGGAGAAAACGTCCCAGCTAGCCCTCGTCTCCCTGGCTGTTGCCTTCTTACCCCCTTTCCTTGCAACGCTGGTCTGCTACCTACTGATCTTTCACAGTCTCCGCAAGGGAACTAGGCTGGAGCCTGGGCTGAAGAGTAAAGCTCTTTGCACCATCAGCTTGGTGTTGCTCATCTACTTGATCTGCTTTTTACCTTACCACGCCAGCCGAGCCATCTACATCCTGGTGCACAGCATCCCGGGACTGTCCTGCCAGACGAAGAGAGCCCTAACGCTGGGCAACCGCCTCACCTCTTCCCTCACCTGCCTGAATGGAGCTCTAGACCCGCTGGTGTATTTGTTTGGTGCAGAGAAGTTTCGAGAGAGGCTTATGCAGGTGTTCTGTGGGAAGAGAGGAGGGTACTCCGGAGCTGCCAGTGGCGAGGGGAAAACAACCCACGAAAGCTCACTGAGCGCCAAGTCTGAGTTCTGA
>TU69243
AAACATTCACAGGGCTGCACTTTCCCGAAACGGTTCAACAATATTTTTGGTACAGAAAacttatttctatttttttaattactcaaGGAGCTGATGGGTGGATATGTCTCTTATCACCAGCATTATTAAACTGAAGGAACGCATTGCATGTATCCGTCTCGCCCTCACTTTAACCCACACGCAAACTCAGAGCTGTTTGTATTCTCTTGGCTGCACCACCAGCTGTTGTTAGACTAACGCCAGCACTTTCAGAAAGATATTCACTCTCTGGAAGCTCTGCATAAGCAAACCCAACTGAGAAGGACTCATCCTCATAGCTACAAGAAATGAATTCTTCAGTAGAATTCGCTTCCTTGCTCTCCAACTATTCATCCGAGAATTGCAGCGCTGAGTCGGTGGTGGAGAATGTCCTCTTTGGTGGATTCTATATCGTCGTGTTCCTTCTGGCCCTGAATGGGAATGTGCTTGCTCTGTGGATCTTCTCTCGCCAGCATGGCACCTCTTCCCCTGCCAATGTCTTCCTGTTGCACCTGGCAGTGGCTGACCTCTCCTATGTGGCGATCTTGCCTCTGCGGGCCACATACCACCTGACGGGGGGACACTGGCCTTTCGGCGAAGTGCCTTGCCGTGTGATTGGCTTCCTCTTCTATGTCAACATGTATGCCAGCATCTACTTTCTAGCATGCGTAGCCGTGGATAGGTATCTGGCGGTGGTGCATGCTGTGCGATCCCTGAAAATCAGACGTGCCCGCTACGCCCATGCCGTCAGTTTCGCCCTCTGGGTCCTGGTCACCATATCCATGGCACCCCTGCTTGCCACTCAGCAGACTATCCAAGGAGACAACGTCACCATTTGCCTGCAGCTATACCGGGAGAAAACGTCCCAGCTAGCCCTCGTCTCCCTGGCTGTTGCCTTCTTACCCCCTTTCCTTGCAACGCTGGTCTGCTACCTACTGATCTTTCACAGTCTCCGCAAGGGAACTAGGCTGGAGCCTGG

Function

symbol description
gpr17 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in positive regulation of Rho protein signal transduction and positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human GPR17 (G protein-coupled receptor 17).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08404 GPR17; G protein-coupled receptor 17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009215 True 1014 mRNA 0.55 1 29057941 29058954
TU69243 False 997 TUCP 0.51 2 29058284 29063030

Neighbor

gene id symbol gene type direction distance location
AMCG00009212 NA coding downstream 5417 29029309 ~ 29052524 (-)
AMCG00009209 NA coding downstream 34013 29020638 ~ 29023928 (-)
AMCG00009196 NA coding downstream 408868 28643287 ~ 28649073 (-)
AMCG00009195 NA coding downstream 417330 28632355 ~ 28640611 (-)
AMCG00009194 LOC106560660 coding downstream 426990 28627412 ~ 28630951 (-)
AMCG00009213 NA coding upstream 733 29063763 ~ 29089403 (-)
AMCG00009211 NA coding upstream 27025 29090055 ~ 29103281 (-)
AMCG00009210 NA coding upstream 57385 29120415 ~ 29135151 (-)
AMCG00009216 NA coding upstream 100243 29163273 ~ 29171791 (-)
AMCG00009217 NA coding upstream 124506 29187536 ~ 29197143 (-)
G55404 NA non-coding downstream 700 29055713 ~ 29057241 (-)
G55359 NA non-coding downstream 164058 28843473 ~ 28893883 (-)
G55333 NA non-coding downstream 302308 28755298 ~ 28755633 (-)
G55326 NA non-coding downstream 329971 28721540 ~ 28727970 (-)
G55268 NA non-coding downstream 552145 28488651 ~ 28505796 (-)
G55488 NA non-coding upstream 395585 29458615 ~ 29458827 (-)
G55551 NA non-coding upstream 696497 29759527 ~ 29762165 (-)
G55610 NA non-coding upstream 912599 29975629 ~ 29976269 (-)
G55648 NA non-coding upstream 1173129 30236159 ~ 30236395 (-)
G55703 NA non-coding upstream 1417749 30480779 ~ 30483373 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other downstream 667845 28385083 ~ 28390096 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 1439769 27613598 ~ 27618172 (-)
AMCG00009151 NA other downstream 1722210 27314317 ~ 27335731 (-)
AMCG00009148 NA other downstream 1904466 27110996 ~ 27153475 (-)
G54821 NA other downstream 2261287 26793541 ~ 26796654 (-)
AMCG00009229 ccd50,LOC106613514 other upstream 597930 29660960 ~ 29704929 (-)
AMCG00009235 NA other upstream 914907 29977937 ~ 29990810 (-)
AMCG00009241 NA other upstream 1186841 30249871 ~ 30256499 (-)
AMCG00009265 NA other upstream 1536444 30599474 ~ 30657612 (-)
G55878 NA other upstream 1871534 30934564 ~ 30937251 (-)

Expression


Co-expression Network