AMCG00009216


Basic Information

Item Value
gene id AMCG00009216
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29163273 ~ 29171791 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009216
aaataaagggCTCGTCCGGGATTTGAACCCGGGACCTCTCGCACCCTAAGCGAGAATCATACCCCTAGACCAACGAGCCGTGGACTTAGAAGAAGGAAGTGATCTTATTCCCATCTCAAGCGTCTTCACCGGATGTACCGTCAGAACTACTTTTCCCAACATGCTGTTCGGCAGCGCTTTTGCGCACAATCGCTTCATATTTAAACTTGTTCTGGGCACTGTTTTGAAAAGATTGTTACCTGCTACGGATTTTTGTGAAGTGAATATAGGTGTAATATCGTGACATGACAGCTTTGCGTCAAAAGAAAAGCACGTGGTTTGTATTATGAAGCGTAAACGGTTATGAGACAGCTTTCTGGCTGAGTGAGTTGTTTTCAAAACGAAACAACGGTGGTGATTTTAGCTTAGGGTTTGATTATTTATGCAGGATGTATTTCGTAGAGGGTTTAACTCAGTTCACCTTCTGCATCTGTCAAAGTCTGCGCCTGCTTTTTTGGCCTGTTTAAGCAAATATTCAGAATTCACTGAAAACTTTGACTGTTTATTTCAATTCTACATTCGATGTGGATTCTACTTCACCAATCGTCTATGAATATGACCTTGCCTACCCTTACATAATGCCTTTTCTGGTACATGACTTGATTTAGTTAGTTGATTGATGAATTGATCATACAGATGAACGGCTACCTTAATAACGTACAGGTCTTTGTTGTCTGGGTCGATGGTAGcgggatttattattttatattttagcagGGATATCCCTTTAGGATCAATCGGAAATGGATGCCTTTCTGGAGACATTACAGGATCAACCTGGGAGCTCCATTTTGACATCATGTGAGCCAGAGCTTCAGGAGCTGATGCGCCAGATTGACATCATGGTGGCCCACCAGAGGACCCAGTGGGAGAGTCAGACCCAGGCCCTGGAGGGGCGGCTACACACCCAAGAGGGGGAGCTCCACTCTGCCAGGGACCTGCTGGAGCAGAAGCACAAGGAGGTGGGAATCCTACGGCAGCAACTACAAGAGGTCTTGAATGGGAAGCAAGAGCTGGTGTCCAAATATGAGGAACAGCTTCAGCGAGTACGGGAAGAGTTATCCAAGCTTAAGCGAAGCTATGAGAAACTCCAGCGCAAGCAGCTTAAGGAAGCCAGGGAAGGAGCCAGGAGCCGAGAGGAAGACAGGACAGAAGTGAGCCGACTAAACGGCAAGATAGAGGAGTTCCGTCAGAAGTCTGTTGAGTGGGAGCAGCAGCGCGTGCAGTACCAGAAGCAGGTGGCCTCTCTAGAGGCCCAGAGGAAAGCACTGGCAGAGCAGCATCAACTCATACAGCAGTCGGCTGCCCACCTGTCACAGACTTCCAGCCGTCAGCAGGAGCAGAGTGAGCTGGTGGGCCTTGCTGAGGTGCGGCGTCTGCGGAGCCAGTTGGAGAGGGCCCAGGATACCCTGCATGCCCAGGAGTTGGAGCTGGAGCGCTTCAGCCTGCTGCAGGGGGAGCTGGGGGACTCCCAGCGGGAACTGCAGGTCAGCACGGTGCTGAGTGAGGAAAAAGCTGAACTCCGGGCCACTCTGCACACGCAGGATGAGTTTGTCCGCAGCGTTGGGCTCCAGCAGCATCAACTCCGTGCTCAGGTGGCCAGACTGTCAGAGGCCCTGCAGGCTAAAGAGCACATTGTTAGGTCTCTAGAAGGCTGTCTGCAGGAGAAGGGGGTGTTTGCAGGACTGGGACCCCTCAGGCAGGAGCTGGAACAGACGCTAATTCATCTCCATGCAGCCCGCTCAAGTGATGCACGCCTAAAGGCTGAAGTGGCTCGGCTTGAAGAGAGCATTGATAAAGTGAAAGGACAGAAAGAAGACATAAAGAAAGATTTGTCCAGAAAACAGCAGGAGCTCCAACACATTGAAGAGGAGCACAGATGCTGCCTGGGGGAAGTAAAGAAATTGAGGGACGAGCTGCAGCAGGCAGATGGGTCGCACAATGCGGCGGTAGAAGGCATGAAGAGGGAGGTGACCCAGCTTACCAGCGAGCTGCACCAGAGAGACATCACCATAGCCACTCTCAGCGGTTCTGCCTCCAGCATTGAGCGTCAGTTGCGCTCTGAGGTGGAGAGGGCAGAGCGCAGGGCAGCGGAACTCAAGGTTGCTCAGGTTCAGCTCGAGACCCTGAAGATCGAGAATCAGCATCTGACTGAGATACTGGAGCGTGTGGAATCCAGAACAACCAAGAAATCGGAGGGGTCGCTGTcggccctgagagagagctACGTGTCCTCGCTGGGTAGCCTGGAGCAGGAGAACCAGCAGCTGCGACAGGACCTGGCTGAGGTACGCGCGAGACTGGAGGCCTCCACCCAGACCTGGCAGGACAAGTACGAGAGGGCACTGCAGACCCAGGGCAGACTAACTCAGCTCTGCACTACTGACGACAGGAAAATTCAGGAAATCCAGATGCAACACACACAAGAGCTCCAAGCCATGAAAACCAAGATGGAGGAAAACGCCTGGCAGTACGAAAGGGAAATTGAGAACCTCAAAAGCcagttggaaaaacaaaatctcagaagTGCCCCCAGCCAAGCAGATGGACAGTCCCTGGTCAGCGATAGTACCTCGGGAACATCCTCATCCCCCCAGTCACCGAAAGGAGCCCCAGAAGATCATTCGTTTCCGAGCAAAGCCCCCGATGGGAATGAGGGGAATCTCTCGGACGCCGCCTCAGTGGAGTCTATGGGGTCACTTGGACGTGATGAGTTTATGCCATTGgcccctctccctgcctccccaGTGGGCTCTATTGCCACTCGCTTCCTGGAGGAGGAAAACCGGCGTTCTGAGGAACTGCTCCAGCAGCTTGATGCCCACATCCAGGATATGAGAGAGGACAATACTAAAACTGTGAAGAAGTACCTTGGGCAGGCTGCTGAGTCTTCCTCTGACTAAACCTGGCATAAGAATGGGGAGTAACCAGGGAAACTCcagtttggattaaaaaaaaaaaacacaggtttGTTTGCATGGGCGAATTTGCACAAATGTGCGTGGCTTGTCAATCAAGAACTTATGGTGGGatggaaatacaattaatgGAGTCTGGGAAGTTGGCTTTCTTAAGAGCTTGCAGGGAAACACCtcaaacaagtgtaaacgtatTAGTTAGACTCTCCAAACTGCAGACATGCCTCTCTTGGGAAACATTGTCTCTCTTTTCAAACAGCAGTGACTCATTTTGAAGACCTTGCTCCTTTTGAAATTAATGACATCTCAAACAGCTATGGTATGTTATTTGGAGGCTGATAGCCATTTAAAGTGAAGTTCAGTGGTAGGACCGATGAATACTCAACCTAAATGTCAACCTAACTGCAAACAGCACTTGCCTCCTGTCaccatgtgtttttcttctgtgtaatatttattttgtcttttctttgtgtGCCTTTATCATGCACTTTCTTTAATTGTTATATTCTTCACAGACCTTTCTGGGGAAAAGAGAGATGttttagcaaatacatttctaataagtgagaagtaaaatatttttgtacagtCTTTtaactgtttgtgtgtcttcCGTGGATCTGTAGTCCAATTATTAAATCTGTCA

Function

GO: NA

KEGG:

id description
K16763 CEP63; centrosomal protein CEP63

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009216 True 3606 mRNA 0.50 14 29163273 29171791

Neighbor

gene id symbol gene type direction distance location
AMCG00009210 NA coding downstream 28122 29120415 ~ 29135151 (-)
AMCG00009211 NA coding downstream 59992 29090055 ~ 29103281 (-)
AMCG00009213 NA coding downstream 73870 29063763 ~ 29089403 (-)
AMCG00009212 NA coding downstream 110749 29029309 ~ 29052524 (-)
AMCG00009209 NA coding downstream 139345 29020638 ~ 29023928 (-)
AMCG00009217 NA coding upstream 15745 29187536 ~ 29197143 (-)
AMCG00009230 NA coding upstream 401278 29573069 ~ 29587854 (-)
AMCG00009228 NA coding upstream 465200 29636991 ~ 29641912 (-)
AMCG00009232 NA coding upstream 533542 29705333 ~ 29705803 (-)
AMCG00009234 NA coding upstream 736818 29908609 ~ 29927458 (-)
G55404 NA non-coding downstream 106032 29055713 ~ 29057241 (-)
G55359 NA non-coding downstream 269390 28843473 ~ 28893883 (-)
G55333 NA non-coding downstream 407640 28755298 ~ 28755633 (-)
G55326 NA non-coding downstream 435303 28721540 ~ 28727970 (-)
G55268 NA non-coding downstream 657477 28488651 ~ 28505796 (-)
G55488 NA non-coding upstream 286824 29458615 ~ 29458827 (-)
G55551 NA non-coding upstream 587736 29759527 ~ 29762165 (-)
G55610 NA non-coding upstream 803838 29975629 ~ 29976269 (-)
G55648 NA non-coding upstream 1064368 30236159 ~ 30236395 (-)
G55703 NA non-coding upstream 1308988 30480779 ~ 30483373 (-)
AMCG00009215 gpr17 other downstream 100243 29057941 ~ 29063030 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other downstream 773177 28385083 ~ 28390096 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 1545101 27613598 ~ 27618172 (-)
AMCG00009151 NA other downstream 1827542 27314317 ~ 27335731 (-)
AMCG00009148 NA other downstream 2009798 27110996 ~ 27153475 (-)
AMCG00009229 ccd50,LOC106613514 other upstream 489169 29660960 ~ 29704929 (-)
AMCG00009235 NA other upstream 806146 29977937 ~ 29990810 (-)
AMCG00009241 NA other upstream 1078080 30249871 ~ 30256499 (-)
AMCG00009265 NA other upstream 1427683 30599474 ~ 30657612 (-)
G55878 NA other upstream 1762773 30934564 ~ 30937251 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018411 CR385078.6 non-coding NC_007131.7 CM002904.2 47120504 ~ 47125583 (-)
grasscarp (Ctenopharyngodon idella) G459447 NA non-coding CI01000321 null 4629578 ~ 4631678 (-)
rainbow trout (Oncorhynchus mykiss) trnap-ugg-305 NA misc NW_023493941.1 JAAXML020000824.1 42296 ~ 42567 (-)
eurasian perch (Perca fluviatilis) G14788 NA non-coding NC_053113.1 CM020910.1 5919899 ~ 5920686 (+)
eurasian perch (Perca fluviatilis) trnap-agg_17 NA coding NC_053126.1 CM020923.1 33613422 ~ 33613493 (-)
striped catfish (Pangasianodon hypophthalmus) trnap-agg_17 NA misc NC_047622.1 CM018568.1 13458827 ~ 13458898 (-)
tiger barb (Puntius tetrazona) trnap-agg_84 NA coding NW_025048651.1 JAEQBD010000996.1 184004 ~ 184075 (-)
tiger barb (Puntius tetrazona) trnae-cuc_31 NA non-coding NC_056702.1 CM032071.1 26971744 ~ 26971815 (-)
mexican tetra (Astyanax mexicanus) trnap-agg_1 NA misc NC_035898.1 CM008301.1 30923812 ~ 30924087 (-)
mexican tetra (Astyanax mexicanus) trnap-agg_17 NA coding NC_035919.1 CM008322.1 10225630 ~ 10225700 (+)