AMCG00009217


Basic Information

Item Value
gene id AMCG00009217
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29187536 ~ 29197143 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009217
GAAGTGGTGATGCAAGAAGTTTCTAGGAAAGCCCTACcagATCTCGACAAAATGGCATGCGCAGCAGACAGCTGCATTCAGTTTACTCGCCATGCAAGTGACGTGCTACTCAATTTGAATCGTCTTCGAAGCAGAGACATCCTGACTGATGTCACTATCCTGGTCAACAGACAGCCTTTTCGAGCTCACAAAACAGTCCTCATGGCCTGCAGTGGGCTCTTCTATACCATCTTTACGGACTCGCTGAAATGCAACCTGAACGCCATCAGCCTGGACCCCAAGGTGGATCCAGAAGGCTTTGCAATTCTGTTAGATTTCATGTACACCTCGCGCCTCACTCTGAAGGAAAGTTTAATCATGGCAGTCATGAACACAGCCATCTACCTGCAAATGGATCACGTGGTTGACACCTGCCACAGGTTTATCAAATCCAGTGACTCTTCAGCCAAGCTGCCCAGGGAAGAGTTTTTGACCTCTGCCCTGCTGTTACCTCAGGATGTTCATGCTTACAGGGCCCATGAAGTGGTAGAGAATTTACCTACAAGGTCTGCCCATTTCAGGGATGTTCGGTATGGTCCTGGCATGTACAGTGGGGTCAGTGCTTCCGGTGCTTCCTATCCCCTTTACAGCCACCTGCCAGTCCAGGGGCTCCCCATTCCTATTGGAAAACTGTCAGATGCCAAAAATCCCTTCTCTGACTTCCCTAAAGGAGGAAGCATCCACCAGAAGCACTGTTTGCCCCTTGATAACACTAGCACTGTGATGGCAGACTACAACCGAGGTGCCACCAACACTTCCAACCTCTGCCTTTCCACCAACTACTCCAGCAGGGAAGTGGCCACAGATGATGGGAAGAGAAAGGAGACCCATGGGAGTATCCCTCAGTCTGCGGGGTTGGCGCCAAGAAAGTATAGCTTTTCTACCATAGGGCATGAATTGACAGAAGAAAGCAAAGAGAACCCACCAATGGAAGAGGAAGAAATGAGGCATCAGCATTACACTCTGAGCATCTCCTCCGGGAGCCGCAAGGGCCTCATGAGCAGCCCTCAGAGCCCACTGAAGTCAGACTGCCAGCCCAACTCCCCTACCGAgtccagcagcagcaaaaaCGCAGCCCTCTCTCAGACGGCAGCCTTGCCTTCCTCCCAGGGAACCCAGGACCCCAAGGCCCGCAACTGGAAGAAATATAAGTTCATCGTGCTGAACTCGGTCAACCAGAACTCAAAGGAGGAAGAAGGAAGCCCCCGGGACCCAGAGACCCGCTCCCCCCAGACCCTGGGCTCTCCTGCCTACCTTCAGTCCAGTGAGTCTGAGCACATGGACTTGCAGACTGCTGCCAAGTTGAGTGAAAATGGGGAAGATCTGCCTGCACCTCAGGCCAGCCGTCTTAACAACATCATCAACAGggcATTGGAAGGATCTCCAAGGAATAATGACAGCCACTCTTCTCTCTACATGAACCACTTAAAATGTTCCTCCTGTGGCTCCCAGTCTCCGCAGCACTCAGATGTCTGCCCCAACACTCTAAGCTCTCATTTTGGGGAAGAGATGTCAGAACTACATTCAGAGTACTCTGACTCCAGCTGTGAAAATGGAACATTCTTTTGCAATGAATGTGACTCCAAATTTGCAGAGGAAGATGCTCTAAAACGTCACACGCTTCAGGTTCACAGTGACAAGCCATATAAATGCGATCGCTGCCAGGCTGCTTTCCGCTACAAAGGAAACCTTGCCAGCCATAAAACCGTCCACACAGGAGAGAAACCGTATCGCTGCAACATTTGCGGAGCTCAGTTCAACAGACCAGCTAACCTCAAGACTCACACTCGCATTCACTCAGGAGAAAAGCCATACAAATGTGAGACTTGTGGAGCTCGGTTTGTGCAGtgtgAGAAATGCAACTTGCACTTTCGCCACAAGAGTCAACTGAGACTCCACCTTCGACAGAAACACGGAGCCATCACCAACACAAAAATTCAGTACCGCATGTCCACTACAGAACTGCCAACTGACCTAACCAAGGCCTGCTGAGCAGCAACTGGAAAGCAAATCTGACCTTGGATTTGAAGGACCTGACTTGTACAATCGTCCAAACTTGTAGTGCCACACTGCACCGGATAAAAACCTGGGCAGAATATGCCTCCCCAAACGGGTTTCCTCTACATGTGAAACTAGAATCAGATCTTCTCTTATTTATAGTCACtttattgtgtatgtatatgtatgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatataagatggGAGTGTTTATAAGCTTTCTG

Function

GO: NA

KEGG:

id description
K15618 BCL6; B-cell lymphoma 6 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009217 True 2308 mRNA 0.49 8 29187536 29197143

Neighbor

gene id symbol gene type direction distance location
AMCG00009216 NA coding downstream 15745 29163273 ~ 29171791 (-)
AMCG00009210 NA coding downstream 52385 29120415 ~ 29135151 (-)
AMCG00009211 NA coding downstream 84255 29090055 ~ 29103281 (-)
AMCG00009213 NA coding downstream 98133 29063763 ~ 29089403 (-)
AMCG00009212 NA coding downstream 135012 29029309 ~ 29052524 (-)
AMCG00009230 NA coding upstream 375926 29573069 ~ 29587854 (-)
AMCG00009228 NA coding upstream 439848 29636991 ~ 29641912 (-)
AMCG00009232 NA coding upstream 508190 29705333 ~ 29705803 (-)
AMCG00009234 NA coding upstream 711466 29908609 ~ 29927458 (-)
AMCG00009233 atp13a3,LOC106613657 coding upstream 732963 29930106 ~ 29955770 (-)
G55404 NA non-coding downstream 130295 29055713 ~ 29057241 (-)
G55359 NA non-coding downstream 293653 28843473 ~ 28893883 (-)
G55333 NA non-coding downstream 431903 28755298 ~ 28755633 (-)
G55326 NA non-coding downstream 459566 28721540 ~ 28727970 (-)
G55268 NA non-coding downstream 681740 28488651 ~ 28505796 (-)
G55488 NA non-coding upstream 261472 29458615 ~ 29458827 (-)
G55551 NA non-coding upstream 562384 29759527 ~ 29762165 (-)
G55610 NA non-coding upstream 778486 29975629 ~ 29976269 (-)
G55648 NA non-coding upstream 1039016 30236159 ~ 30236395 (-)
G55703 NA non-coding upstream 1283636 30480779 ~ 30483373 (-)
AMCG00009215 gpr17 other downstream 124506 29057941 ~ 29063030 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other downstream 797440 28385083 ~ 28390096 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 1569364 27613598 ~ 27618172 (-)
AMCG00009151 NA other downstream 1851805 27314317 ~ 27335731 (-)
AMCG00009148 NA other downstream 2034061 27110996 ~ 27153475 (-)
AMCG00009229 ccd50,LOC106613514 other upstream 463817 29660960 ~ 29704929 (-)
AMCG00009235 NA other upstream 780794 29977937 ~ 29990810 (-)
AMCG00009241 NA other upstream 1052728 30249871 ~ 30256499 (-)
AMCG00009265 NA other upstream 1402331 30599474 ~ 30657612 (-)
G55878 NA other upstream 1737421 30934564 ~ 30937251 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032893 bcl6aa coding NC_007117.7 CM002890.2 28216487 ~ 28222592 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_02936853_02939837 BCL6A, BCL6 coding CI01000340 null 2935637 ~ 2939837 (-)