AMCG00009218


Basic Information

Item Value
gene id AMCG00009218
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29366638 ~ 29402226 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009218
ATGGTCATCCCAACCCAGCCTCCTTTAACGGCCACTAAGAAGTCCACAATGAAGCCTCAGGCCCCTGCTGTCCCCCAGAGCCCGGTTGCCACTGTTCCATCACCCAAGCCGCAGCCTCAATCTATGCCTCAGCCGCAACCGGTCCCGGCCTCCTATACAACCGCCTCCACTCCCAGCCGGCCCACCTACAATGTCCAGGTCAAGACGGCCCAGGCAAGCCCCCATTACATGCCTCCAGGGCCGCAGCCGCAATCTCCTGCCTTCAACCAGCAGCAGTTTCCCCAGCAGCCCGCGCGCTCCCCGTGTCCGGTCCAGTACGCGCCTGCCCAGCCCCGGGCTTCTGATTTTGCTTACGGGCCAGCACAGCCGGGCCGCCAGCCGGAGCAGAGCTATGGCtatgcccccccgcccccgagAGGGTACTCCGACCCCTACTACCCCGGAGCAGCGGTCCAAGCTCCAGCCTATGGAGTGCAGAACACCTGGAGACCTGAACCGAGTTACTCCCATGCAGCCACCGGCCCTGGGTACCAGCCTCCTGCTCCCAAGAAGACCTACATCACCGACCCCCCCCAAGCCATGGCTCCGGCTCCCATGGCTCAGTATGCTCCAGGACTTCCACAGAAGGTGGGTTCTTTGGCCCCTGGTGTTGCCTCCCCTATGTTGCCCCTGGGTCCCAGCAATCCTGCAGGAAGACCTGAAGATGAACTTGAGCGCCTTACCAAAAAGATGCTGTATGACATGGACAATCCCCCATCCGAGGAGTACTTTGTGTCTCGCCTGACTTCAGAGTGCCAGCCCGGCTGCAGCGGCGGCCTCACTCTGCTCAGGTTCACACGAGGCCGCTGCTCATGCTGTGGGGAAAACGTGGTGGGAGAAGGCACTGGCTGCACTGCCATGGACCAGGTGTTCCACGTGGACTGCTTTATCTGCATGACCTGTGGCCGCAAGCTCCGTGGAAAACCCTTCTACGCTGTGGAGAAGAAAGCCTACTGTGAACCCTGCTACATAGTGAGTACAGCAGCTGACAAGTTGCTCTTCTTACAGCAACTATAA

Function

GO:

id name namespace
GO:0060030 dorsal convergence biological_process
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009218 True 1056 mRNA 0.61 4 29366638 29402226

Neighbor

gene id symbol gene type direction distance location
AMCG00009221 NA coding upstream 56865 29308856 ~ 29309773 (+)
AMCG00009214 LOC106599142 coding upstream 264561 29075081 ~ 29102077 (+)
AMCG00009202 NA coding upstream 346746 29014392 ~ 29019892 (+)
AMCG00009206 NA coding upstream 439810 28910313 ~ 28926828 (+)
AMCG00009203 ryk coding upstream 473594 28867586 ~ 28893044 (+)
AMCG00009219 LOC100694679,LOC102204076,LOC108271779,LOC105925372,LOC102787755,LOC102295835,LOC101474685 coding downstream 14210 29416436 ~ 29419290 (+)
AMCG00009225 NA coding downstream 59259 29461485 ~ 29470524 (+)
AMCG00009224 NA coding downstream 82317 29484543 ~ 29487155 (+)
AMCG00009223 NA coding downstream 126653 29528879 ~ 29529494 (+)
AMCG00009222 tp63 coding downstream 160882 29563108 ~ 29573053 (+)
G55463 NA non-coding upstream 178683 29186694 ~ 29187955 (+)
G55461 NA non-coding upstream 181454 29184921 ~ 29185184 (+)
G55394 NA non-coding upstream 335160 29029318 ~ 29031478 (+)
G55357 NA non-coding upstream 467945 28897976 ~ 28898693 (+)
G55308 NA non-coding upstream 733306 28632355 ~ 28633332 (+)
G55487 NA non-coding downstream 56195 29458421 ~ 29458743 (+)
G55512 NA non-coding downstream 239263 29641489 ~ 29641936 (+)
G55564 NA non-coding downstream 456069 29858295 ~ 29932152 (+)
G55586 NA non-coding downstream 573377 29975603 ~ 29976267 (+)
G55595 lsg1 non-coding downstream 591396 29993622 ~ 29994641 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 191907 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 258411 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 354870 28928892 ~ 29011768 (+)
AMCG00009204 NA other upstream 567038 28766454 ~ 28799600 (+)
AMCG00009164 NA other upstream 1740627 27613583 ~ 27626011 (+)
G55573 NA other downstream 505685 29907911 ~ 29911564 (+)
G55591 NA other downstream 592900 29995126 ~ 29995438 (+)
G56060 NA other downstream 2759534 32161760 ~ 32165365 (+)
G56368 NA other downstream 4598570 34000796 ~ 34031445 (+)
G56369 NA other downstream 4613444 34015670 ~ 34018815 (+)

Expression


Co-expression Network