AMCG00009219 (LOC100694679,LOC102204076,LOC108271779,LOC105925372,LOC102787755,LOC102295835,LOC101474685)


Basic Information

Item Value
gene id AMCG00009219
gene name LOC100694679,LOC102204076,LOC108271779,LOC105925372,LOC102787755,LOC102295835,LOC101474685
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29416436 ~ 29419290 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009219
CTCTGTATGACTGAGAGTTTGTACATTATTCCGCAGAATACTCTGGAGACCTGCAACATCTGTATGAAGCCCATAATGGAGCGTATCCTGAGAGCCACGGGCAAAGCCTACCACCCGCACTGCTTCACCTGCGTGGTCTGCCACCGCAGCCTGGATGGCATTCCCTTCACCGTGGATGCTGGCAACCACATCCACTGCATCGAGGACTTTCACAAGAAATTTGCCCCTCGCTGCTCTGTGTGTCAGGAGCCCATAATGCCAGCCCCCGGCCAGGAGGAGACTGTTCGTATTGTGGCTTTAGACCGAGATTTCCATGTGCAGTGTTACCGCTGTGAGGTTAGTGGCACGCAGCCTGGATTTGATTGTGGATCTCTCCTGTCAGAGGGGGATAACCAGGGCTGCTACCCCCTGGACGGGCACATCCTCTGCAAAAACTGTAACACCGCTCGTATCCAGGCGCTGACTGCCAAAGCCACCACCGATCTCTGA

Function

NR:

description
PREDICTED: lipoma-preferred partner homolog

GO:

id name namespace
GO:0060030 dorsal convergence biological_process
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009219 True 489 mRNA 0.55 3 29416436 29419290

Neighbor

gene id symbol gene type direction distance location
AMCG00009218 NA coding upstream 14210 29366638 ~ 29402226 (+)
AMCG00009221 NA coding upstream 106663 29308856 ~ 29309773 (+)
AMCG00009214 LOC106599142 coding upstream 314359 29075081 ~ 29102077 (+)
AMCG00009202 NA coding upstream 396544 29014392 ~ 29019892 (+)
AMCG00009206 NA coding upstream 489608 28910313 ~ 28926828 (+)
AMCG00009225 NA coding downstream 42195 29461485 ~ 29470524 (+)
AMCG00009224 NA coding downstream 65253 29484543 ~ 29487155 (+)
AMCG00009223 NA coding downstream 109589 29528879 ~ 29529494 (+)
AMCG00009222 tp63 coding downstream 143818 29563108 ~ 29573053 (+)
AMCG00009227 NA coding downstream 229327 29648617 ~ 29653337 (+)
G55463 NA non-coding upstream 228481 29186694 ~ 29187955 (+)
G55461 NA non-coding upstream 231252 29184921 ~ 29185184 (+)
G55394 NA non-coding upstream 384958 29029318 ~ 29031478 (+)
G55357 NA non-coding upstream 517743 28897976 ~ 28898693 (+)
G55308 NA non-coding upstream 783104 28632355 ~ 28633332 (+)
G55487 NA non-coding downstream 39131 29458421 ~ 29458743 (+)
G55512 NA non-coding downstream 222199 29641489 ~ 29641936 (+)
G55564 NA non-coding downstream 439005 29858295 ~ 29932152 (+)
G55586 NA non-coding downstream 556313 29975603 ~ 29976267 (+)
G55595 lsg1 non-coding downstream 574332 29993622 ~ 29994641 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 241705 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 308209 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 404668 28928892 ~ 29011768 (+)
AMCG00009204 NA other upstream 616836 28766454 ~ 28799600 (+)
AMCG00009164 NA other upstream 1790425 27613583 ~ 27626011 (+)
G55573 NA other downstream 488621 29907911 ~ 29911564 (+)
G55591 NA other downstream 575836 29995126 ~ 29995438 (+)
G56060 NA other downstream 2742470 32161760 ~ 32165365 (+)
G56368 NA other downstream 4581506 34000796 ~ 34031445 (+)
G56369 NA other downstream 4596380 34015670 ~ 34018815 (+)

Expression


Co-expression Network