AMCG00009222 (tp63)


Basic Information

Item Value
gene id AMCG00009222
gene name tp63
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29563108 ~ 29573053 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009222
TACTCCACAGAACTGAAGAAGCTGTATTGTCAGATCGCCAAGACGTGCCCTATTCAGATCAAGGTGATGACGCCCCCTCCCCAAGGCGCTGTGATCCGGGCGATGCCAGTCTACAAGAAGGCCGAGCATGTCACAGAGGTGGTGAAGCGCTGCCCCAACCACGAGCTCAGCCGCGAGTTCAATGACGGTCAAATAGCTCCACCCAGTCACCTTATTCGTGTGGAGGGAAACAGTCATGCCCAGTATGTTGAGGACTCAATGACAGGCCGCCAAAGTGTTTTGGTGCCTTATGAACCGCCTCAGGTGGGCACTGAATTCACCACCATCCTTTACAACTTCATGTGCAACAGCAGCTGTGTTGGAGGCATGAACAGGCGCCCCATTCTCATCATTGTCACACTGGAAACTAGAGATGGTCAGGTCCTCGGTCGCCGCTGTTTCGAAGCCCGGATCTGCGCTTGTCCCGGGAGAGACCGCAAGGCGGACGAAGACAGCATCCGGAAACAGCAGGTCACGGACGGGACAAAGAGCAGTGATGGTACGAAGCGCCCTTTTCGTCAGGCATCACACGGGATTCAGATGACATCCATCAAGAAGCGAAGATCAACAGACGACGAGTTATTTTGTTTGCCTataaaAGGCCGTGAAATCTATGAGATTTTGTCCAAAATTAAAGAGTCTTTGGAGCTCATGCAGTTTCTGCCACAGCACACAATTGAGTCATAccgacagcagcagcagaatctGATCCAGAAACAATTCGGTGTCTTGGACGATGAGAGTAACGGCATGTATCCCTTTCCGTGCCCCAGGGGCTCCATGCAATCACAGCCTTCCTATGGCTCCAGCTCCCCCCCCCTCAGCAAGGGGCCCAGCATGAACAAGCTGCCCTCTGTCAGCCAACTCATCAACCCCCAGCAGCGCAACTCCCTCACGCCATCCAGCATGTCTGGAGGCCTCACTGATATGGCACCCATGATGGGCACACACATTCCCATGAGCAGTGACATGAGTACGCTGAGCCCCACCCACGCCCTGCAGCCCCAGCTACCCATGGTACCGTCCTCCCATTGCACACCACCACCCCCCTACCCTACTGACAGCAGCATCTCCAGCTTCCTTGTGAGGCTTGGCTGCTCCGCTTGTCTGGAGTATTTCACCGCTCAGGGACTGACTAACATCTACCAGATTGAGAACTACAGCATGGAGGACCTGTCCCGGCTCAAGATCCCCACAGAGTTCCAGCACATCATCTGGAAGGGGATCCTGGACCACAGGCAGTCCATGGAGTTCTCCCCGCCACCCCACATCCTACGCGCCACCAGCGGGACGTCCACGGTGAGCGTGGGCTCGTCCGAGGCCCGGGGGGAGCGGGTCATCGACGCCGTGCGCTTCACCCTGCGCCAGACCATTTCCTTCCCCCCCCGCGACGACTGGACCGACTTCTCCTTCGACATGGACGCCCGTCGGAACAAACAGCAGCGCATCAAGGAGGAGGGCGAGTAACGTACCCCAGCCCTGCCCCTCTCCCCGCAACTCCAACACAAAAACTGTGACAGGACATTCAACAGCCTaggattttctttcaaattccttttttattttttatttttagtggagaaaaaaaaccttaaaaagaTGCACTTATTTCTcttatgtgtattttgtaatggtGTCATAAACTGGCCCTGATTTATTGCAAGCTAGGTGAGTGGTGCATGGTGCTTATAAGtgcgttttttcttttatcGCTGTGACAGAGCACTTAGTAATTATGTACATCAgagaacaatttttttttttattgctttgaaACTATCTAGTGTTATTGCTTCCTCAGTTCAAATATTGGAAATTCAACACTTTGAGACATAGCGGAATGTGCTAATTTAGGTTTAAAAATGAGCTGACTGATTTACATAGTGTAATTCTTCAAATCTTTCTGCATATTCATGTATAATATCTCAACTCTGGCATTAGCCAGttaatgattgtattattttgaagtttttttttgtttttctttttcatatttttgttttacctgatTACTGCCAAAAGAAAGTGTTATACTATCTTGTCACTTATTTGTATAGATTGTGGTAGATAAGGAGTGTCAATACAGAGAGTATTGCTTAATAACAGCATTGTATTAACTGATTCACCTTCCTGAATCCTGTTTATGACAGCATTTTTGAAGTATTGCATTGTGGCCATTTACTGTATATTGGATCATTCATAATTTACTTTCAGTTCTTCTGTTCTGGTTTTCAAAGTTACGCCATTCAGACTGATACCACCTAAGATAAAGTTGCAGTTTCAGATAGGGCCTTTTTAATTGATCTGTCCGAACTTCATTTTGCTACATTTCACAACGTTTTCTTAGGAACAACTGTAATATTTGAATACTGCAAGTGATAGGCTGGAACGTTTAGTTGCTTTTAGGATGATACTGCCTCTGAACTACaatgagacttttttttttttttttggttggagCACACAAGGATGGATTTCCAAGGTTTTGGACATTTTTGGGTGCTGAATGTCACCTCTGTGTTGTGGTGTTTGAAGAATTATCTGCTTTCTAAAAGCTGCAATAGCAGATGCATGTCACGATGTACATAATGGCCAACCACAACCATAGAGgtaattgtatatacatttttttgtataaaaagaTATTGTTTAAAGTGGAAAAGGGGTTGTCCCACATACAGTAAGCTTTATTTTGTAACGGGCTATTTACTCTTCTGCTGTATGTTTAGGGACCATTTAAAGCCGAGCAGTGTTCTTTGCAGTCCACGTGGATTCTGTTTTCATTCTATAACGGTTGTACGTCACTCCTGTAACATGGACATCTCACTGCTTTTACTGTGGTTTATCTAATCTTGACACACTATTAGCCGTTCTTCAGCTTTAATTTAAGAAGCAATCCTTATATTTCAAAGTCTATTCCTAATTGTCAAATGCCTAATTCTAATCAACAggtgaaaacaaaaagcactgtgAAAGGATACATTTCAAATCAGATTTATAACCAGTAAGTTAACCACATTTCCTGACCCTATTGCTGTCACAGTATGAAAACAGAACCATTAGGTTACAGTGATGTATAGTTCTTATCGGTCTTTACACTGGGAGAGGCAGAAGCGTATACTCTTCTGTATTGGTGTGTAGAGGCGGTAATGTGTGACACACGTCTGTTACATTGGAAAGGGTACAATGCGTTTTCACTGTTTTGGTCTTGTTTGATGATTTgtcatttcaatgtatatttgaGCACAGAGTCCTCAATTTCAATGAAAGGCATCATATACTGCCTAAGATAATTCAACAGGATTGAAATCGATcagtttgtatatatgtgttcaCGTATCCAACCAAAAGTTAATGGTAATTTAAGTAGCCTTTTCATGTCacaattcatttaaagaaatatggaaaatatatcaaaataaattttatatatagtttttttcagAACCACAGtgatcatacaaaataaaaattcaaagtacggtttaaaaaagtatttgcaaatgaaagaaacaactTTTCAAgatttagttttacatttttttttattttatgtactgGGGAATTTGACTTTTGTaaaattgtttgtatatatgttacaatttacagatttataaacacatttttgtccTAATTttgatataaacaaaaaaataaataaaaaagattaaacaaa

Function

symbol description
tp63 Enables DNA binding activity. Acts upstream of or within several processes, including epidermis morphogenesis; intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress; and negative regulation of transcription, DNA-templated. Located in nucleus. Is expressed in several structures, including ectoderm; epiblast; integument; pharynx; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including ADULT syndrome; EEC syndrome (multiple); ectodermal dysplasia (multiple); orofacial cleft 8; and split hand-foot malformation 4. Orthologous to human TP63 (tumor protein p63).

NR:

description
PREDICTED: tumor protein 63 isoform X3

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051262 protein tetramerization biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10149 TP63; tumor protein p63

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009222 True 3715 mRNA 0.43 10 29563108 29573053

Neighbor

gene id symbol gene type direction distance location
AMCG00009223 NA coding upstream 33614 29528879 ~ 29529494 (+)
AMCG00009224 NA coding upstream 75953 29484543 ~ 29487155 (+)
AMCG00009225 NA coding upstream 92584 29461485 ~ 29470524 (+)
AMCG00009219 LOC100694679,LOC102204076,LOC108271779,LOC105925372,LOC102787755,LOC102295835,LOC101474685 coding upstream 143818 29416436 ~ 29419290 (+)
AMCG00009218 NA coding upstream 160882 29366638 ~ 29402226 (+)
AMCG00009227 NA coding downstream 75564 29648617 ~ 29653337 (+)
AMCG00009226 opa1,LOC107585173,LOC107722677,LOC107711112,LOC107582739 coding downstream 143974 29717027 ~ 29742605 (+)
AMCG00009231 her6,hes1,LOC107711114,LOC107680502,LOC107582845,LOC107722674,LOC107685314 coding downstream 285872 29858925 ~ 29860369 (+)
AMCG00009237 fam43a,LOC106573864,LOC102785697 coding downstream 435749 30008802 ~ 30009842 (+)
AMCG00009238 NA coding downstream 613847 30186900 ~ 30208729 (+)
G55487 NA non-coding upstream 104365 29458421 ~ 29458743 (+)
G55463 NA non-coding upstream 375153 29186694 ~ 29187955 (+)
G55461 NA non-coding upstream 377924 29184921 ~ 29185184 (+)
G55394 NA non-coding upstream 531630 29029318 ~ 29031478 (+)
G55357 NA non-coding upstream 664415 28897976 ~ 28898693 (+)
G55512 NA non-coding downstream 68436 29641489 ~ 29641936 (+)
G55564 NA non-coding downstream 285242 29858295 ~ 29932152 (+)
G55586 NA non-coding downstream 402550 29975603 ~ 29976267 (+)
G55595 lsg1 non-coding downstream 420569 29993622 ~ 29994641 (+)
G55596 NA non-coding downstream 422510 29995563 ~ 29995870 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 388377 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 454881 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 551340 28928892 ~ 29011768 (+)
AMCG00009204 NA other upstream 763508 28766454 ~ 28799600 (+)
AMCG00009164 NA other upstream 1937097 27613583 ~ 27626011 (+)
G55573 NA other downstream 334858 29907911 ~ 29911564 (+)
G55591 NA other downstream 422073 29995126 ~ 29995438 (+)
G56060 NA other downstream 2588707 32161760 ~ 32165365 (+)
G56368 NA other downstream 4427743 34000796 ~ 34031445 (+)
G56369 NA other downstream 4442617 34015670 ~ 34018815 (+)

Expression


Co-expression Network