AMCG00009226 (opa1,LOC107585173,LOC107722677,LOC107711112,LOC107582739)


Basic Information

Item Value
gene id AMCG00009226
gene name opa1,LOC107585173,LOC107722677,LOC107711112,LOC107582739
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29717027 ~ 29742605 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009226
ATGTATTCCTCACAAAATAATCCATgcgtctgtttttgtttgtttgtatatgtgtgtagtTTGGCCTGCAGGAACCTGGTTGCCAGTAAATCGGGGCTGAAGGTACGCATCCCCTTGCAGAAGCTGCACCCGCTGTCCCGCTCCATCCACCACAGGAACTCCCAGGGCACCAACTCTCACAGACCTCCCCCATGCTGTGCAGCTCGACACTTCACCTCTCTGTCCCGCCTGCCAGTGCGGCCAGCCCTGCCCCTGCCCGGTGCACATGGCTACCAACCTCACCGCACCTTCTGGGTGGCTAGGCTGGCAACCAGGCTGCTGCGGCTTCGTTATCTTTTGCTGGGGTCGGCGGTGGGGGGAGGCTATACTGCGAAAAAGACTTATGATGAATGGAAGGACATGTTGCCAGATCTCAGTGAATATAAGTGGATTGTGCCCGATTTTATCTGGGAGCTTGATGAACATATTGATTTTGaaAAAATCGCCAATGCCCTTCCTGATGCAGAGTATCTCGCCAAGCTGCTGCCTGACTTTGAGAAGATTGGAGAGAACTTCAGCTTCTTGAAAGGCCTGATTTCAAAAGGTGTGAGTGTGGTTAGTGAAGTCACAGGAGCTTCTGGTCTGCATCTGTTGTTAGtttttttttttagttttgttttattttactgttttcttCCTCacctccttccctcccctctctcctttgTAACCACACAACAGGGTCTGCTTGGGGAGCTCATTCTCATACAGCAGCAAATCCAGGAGCACGAGGAGGCGGCGCGCAGGGCCACAGGCTATAACGCAAGCTCCTCGCAGCAGAAGCGCAAGgtATCTGATAAAGAAAAAGCTGAACAACTTCAAGAGGAACTTCTTCGGACTCAGATGAAGTACCAGAGAATACTTGAGCGCCTTGagaaggagaacaaggaactaAGGAAAGTGGTGCTACAGAAAGATGACAAAGGCATCCACCAGAGAAAGGTCAAGAAGTCCTTAATTGACATGTACTCCGAGGTTTTGGACATCCTGTCGGACTATGATTCCAACTATAACACCCAGGATCACCTGCCAAGGGTTGTGGTGGTTGGAGACCAGAGTGCTGGCAAGACCAGTGTCCTGGAGATGATTGCCCAAGCCAGGATATTCCCCCGGGGGTCTGGGGAAATGATGACTCGAGCACCTGTCAAGGTGACTCTGAGTGAGGGTCCTCACCACGTGGCTATGTTTAAAGACAGCACCCGTGAGTTCGATCTCAGCAAAGAAGAAGATCTTGCTGCCTTAAGACATGAAATTGAAATCAGGATGCGGAAGAGTGTCAAGGAAGGACAGACAGTCAGCCCAGAGaCCATCTCTCTGAGCGTGAAGGGCCCTGGAATACAAAGAATGGTGCTGGTGGACCTGCCCGGGGTTATCAGTaCGGTGACCTCTGGTATGGCGGCAGACACTAAAGAGACCATTTTCAGCATAAGCAAGGCCTACATGCAGAACCCCAATGCCATCATTCTCTGCATTCAAGATGGCTCTGTGGATGCTGAGCGTAGTATTGTGACTGACCTGGTCAGTCAGATGGACCCCCAGGGCAAAAGGACCATCTTTGTGTTGACCAAAGTGGACCTAGCTGAGAAGAACCTGGCCAGCCCCAGCAGGATTCAACAAATTGTTGAAGGAAGACTATTTCCTATGAAGGCTTTGGGGTATTTTGCTGTTGTAACTGGGAAAGGTAGTAGCAGTGAAAGTATTGACTCTATTAAAGACTATGAAGAGGACTTTTTCCAGAATTCCACATTACTGAAGACTGGGATGCTGAAGGCCCATCAGGTGACGACTAAAAACCTGAGTCTGGCTGTGTCCGACTGTTTCTGGAAGATGGTCCGTGAGTCAGTGGAGCAGCAGGCCGATGCATTTAAAGCATCACGCTTCAACCTGGAGACAGAGTGGAAGAACAATTACCCTCGGCTACGAGAACTTGACAGGAATGAACTCTTTGAAAAAGCCAAGAATGAAATCTTGGATGAAGTGATCAGCCTGAGTCAAGTTACACCAAAACATTGGCAAGTGATTTCCTTTTTTAGGAGTGTGTGTAAGATTAAGACTATGGGGGAGGCTATTCTTCAGAAGAAGCTGTGGGAGAGAGTGTCCACTCATGTGATTGAGAACATCTACCTACCTGCTGCCCAGACCATGAACTCTGGAACCTTTAACACCACTGTTGACATCAAACTCAAGCAATGGACAGACAAGCAGCTACCGCATAAGGCACTGGAGGTGGCCTGGGAGACTCTTCAGGAAGAGTTTGCCCGTTTCATGTGTGAATATAAAGGCAAAGACCAAGACGACATCTTTGATAAGCTCAAAGAGGCCGTTAAAGATGAGAGCATAAAACGACACAACTGGAATGAACGTGCCGAGGATAGCTTGaGAGTAATCCAACACAACGCTTTAGAGGACCGTTCCATAACGGACAAACCACAGTGGGATGCGGCAATTCAGTTTATGGAGGAGACTCTTCAGACTCGCCTCAACGACACCGAATCTGTCATCTCAGATATGGTGGGGCCTGACTGGAAGCAGAGATGGCTGTACTGGACAAGTCGCACTGCAGACCAACACATTCATAATGAAACCAAAAATGAACTGGAGAGGCTGCTGAAGCTGAATGAGGACCACACGGCTTATCTTGCCAACGACGAGGTCACAACCGTGAGAAAAAACCTGGAATCCCGGGGTGTGGAGGTGGACCCTGTTTTGATTAAGGACACATGGCATCAAATGTATCGACGCCACTTCCTTCAGAAAGCACTGTCTCACTGCAACCTCTGTCGAAGAGGTTTCTATTACTATCAGCGGCACTTTGAGGACTCGGAGCTGGAGTGCAATGATGTGGTCCTGTTCTGGCGGATTCAGAGAATGCTTGGAATTACAGCAAACACCCTCAGACAGCAGCTCACAAACACTGAAGTTCGTCGCCTGGAAAAGAACGTGAAGGAGGTGCTGGAGGACTTCGGGGAAGATGTTGAGAAGAAGGTCCACCTGATAACAGGCCGGAGAGTGCAGTTAGCCGAGGACCTCAGTGAGTATAGCCCGCTGAGTTGTTTATTACCAAGTCAGCAGCTGTGTGGGACCTGGCAATGGGCTGCTACGAGAGAGTGCGCCCTGACAAATTAG

Function

symbol description
opa1 Predicted to enable GTPase activity; microtubule binding activity; and phospholipid binding activity. Acts upstream of or within chordate embryonic development; mitochondrion morphogenesis; and ventricular cardiac muscle cell development. Predicted to be located in mitochondrial inner membrane and mitochondrial intermembrane space. Predicted to be integral component of membrane. Predicted to be active in microtubule and mitochondrial membrane. Is expressed in retina. Human ortholog(s) of this gene implicated in Behr syndrome; dominant optic atrophy plus syndrome; mitochondrial DNA depletion syndrome 14; optic atrophy; and optic atrophy 1. Orthologous to human OPA1 (OPA1 mitochondrial dynamin like GTPase).

NR:

description
PREDICTED: dynamin-like 120 kDa protein, mitochondrial isoform X2

GO: NA

KEGG:

id description
K17079 OPA1; optic atrophy protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009226 True 3165 mRNA 0.49 28 29717027 29742605

Neighbor

gene id symbol gene type direction distance location
AMCG00009227 NA coding upstream 63690 29648617 ~ 29653337 (+)
AMCG00009222 tp63 coding upstream 143974 29563108 ~ 29573053 (+)
AMCG00009223 NA coding upstream 187533 29528879 ~ 29529494 (+)
AMCG00009224 NA coding upstream 229872 29484543 ~ 29487155 (+)
AMCG00009225 NA coding upstream 246503 29461485 ~ 29470524 (+)
AMCG00009231 her6,hes1,LOC107711114,LOC107680502,LOC107582845,LOC107722674,LOC107685314 coding downstream 116320 29858925 ~ 29860369 (+)
AMCG00009237 fam43a,LOC106573864,LOC102785697 coding downstream 266197 30008802 ~ 30009842 (+)
AMCG00009238 NA coding downstream 444295 30186900 ~ 30208729 (+)
AMCG00009239 NA coding downstream 476264 30218869 ~ 30223477 (+)
AMCG00009250 NA coding downstream 522648 30265253 ~ 30298128 (+)
G55512 NA non-coding upstream 75091 29641489 ~ 29641936 (+)
G55487 NA non-coding upstream 258284 29458421 ~ 29458743 (+)
G55463 NA non-coding upstream 529072 29186694 ~ 29187955 (+)
G55461 NA non-coding upstream 531843 29184921 ~ 29185184 (+)
G55394 NA non-coding upstream 685549 29029318 ~ 29031478 (+)
G55564 NA non-coding downstream 115690 29858295 ~ 29932152 (+)
G55586 NA non-coding downstream 232998 29975603 ~ 29976267 (+)
G55595 lsg1 non-coding downstream 251017 29993622 ~ 29994641 (+)
G55596 NA non-coding downstream 252958 29995563 ~ 29995870 (+)
G55597 NA non-coding downstream 255624 29998229 ~ 29998486 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 542296 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 608800 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 705259 28928892 ~ 29011768 (+)
AMCG00009204 NA other upstream 917427 28766454 ~ 28799600 (+)
AMCG00009164 NA other upstream 2091016 27613583 ~ 27626011 (+)
G55573 NA other downstream 165306 29907911 ~ 29911564 (+)
G55591 NA other downstream 252521 29995126 ~ 29995438 (+)
G56060 NA other downstream 2419155 32161760 ~ 32165365 (+)
G56368 NA other downstream 4258191 34000796 ~ 34031445 (+)
G56369 NA other downstream 4273065 34015670 ~ 34018815 (+)

Expression


Co-expression Network