AMCG00009227


Basic Information

Item Value
gene id AMCG00009227
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29648617 ~ 29653337 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009227
ATGGTGAATGCAGACCTTTCTGTGGAGTTCAGTGAGTCCTGCAGGGGGCTGTGGTGGGAGTGCGTGACTCATGCCTTTGAGGGCGTTACCACCTGTGAAGACTATGACTCTATATTTGCCGAACATTCACTAAGGCTGGTGGCCACCCGAACCCTGATGATCATCGCTGACATCCTCGCTGTCTTTGGCTTCCTTTTTCTGCTCCTCGGGCTGGACTGCATAAAATTCCTGAAGAATGAAACCAACATCAAGCTGCGCATTTGCTATGTGGCGGGATTCACCTTCCTGCTTGGAGCTGTGCCCGGGATGACGGCCTCAGTGTGGTACGCTGTCAGTATCTACGTGGAGCGTTCCACCCTGGTCTTGCAGAATCTCTTCTTGGGGGTCCAGTACCAGCTGGGATGGTCATGTTGGCTGGGCATGGCAGGGTCTATGGGCTGTGCTCTCACAGGGACGCTGCTCACCTGCTGCATGTATCTCTTCAAAGATGTGGGGTCTAGGCAAAATCACTACCACCCCTCAAGGACAAAGAACAGAGCGAAAAGCAAATCAAGGAGATCATCTTCCACTATGCACTCCCACGCCAAAACTGAAACAGCCAAGATGTATGCAATTGACACCAGAGTGTAG

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009227 True 630 mRNA 0.52 5 29648617 29653337

Neighbor

gene id symbol gene type direction distance location
AMCG00009222 tp63 coding upstream 75564 29563108 ~ 29573053 (+)
AMCG00009223 NA coding upstream 119123 29528879 ~ 29529494 (+)
AMCG00009224 NA coding upstream 161462 29484543 ~ 29487155 (+)
AMCG00009225 NA coding upstream 178093 29461485 ~ 29470524 (+)
AMCG00009219 LOC100694679,LOC102204076,LOC108271779,LOC105925372,LOC102787755,LOC102295835,LOC101474685 coding upstream 229327 29416436 ~ 29419290 (+)
AMCG00009226 opa1,LOC107585173,LOC107722677,LOC107711112,LOC107582739 coding downstream 63690 29717027 ~ 29742605 (+)
AMCG00009231 her6,hes1,LOC107711114,LOC107680502,LOC107582845,LOC107722674,LOC107685314 coding downstream 205588 29858925 ~ 29860369 (+)
AMCG00009237 fam43a,LOC106573864,LOC102785697 coding downstream 355465 30008802 ~ 30009842 (+)
AMCG00009238 NA coding downstream 533563 30186900 ~ 30208729 (+)
AMCG00009239 NA coding downstream 565532 30218869 ~ 30223477 (+)
G55512 NA non-coding upstream 6681 29641489 ~ 29641936 (+)
G55487 NA non-coding upstream 189874 29458421 ~ 29458743 (+)
G55463 NA non-coding upstream 460662 29186694 ~ 29187955 (+)
G55461 NA non-coding upstream 463433 29184921 ~ 29185184 (+)
G55394 NA non-coding upstream 617139 29029318 ~ 29031478 (+)
G55564 NA non-coding downstream 204958 29858295 ~ 29932152 (+)
G55586 NA non-coding downstream 322266 29975603 ~ 29976267 (+)
G55595 lsg1 non-coding downstream 340285 29993622 ~ 29994641 (+)
G55596 NA non-coding downstream 342226 29995563 ~ 29995870 (+)
G55597 NA non-coding downstream 344892 29998229 ~ 29998486 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 473886 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 540390 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 636849 28928892 ~ 29011768 (+)
AMCG00009204 NA other upstream 849017 28766454 ~ 28799600 (+)
AMCG00009164 NA other upstream 2022606 27613583 ~ 27626011 (+)
G55573 NA other downstream 254574 29907911 ~ 29911564 (+)
G55591 NA other downstream 341789 29995126 ~ 29995438 (+)
G56060 NA other downstream 2508423 32161760 ~ 32165365 (+)
G56368 NA other downstream 4347459 34000796 ~ 34031445 (+)
G56369 NA other downstream 4362333 34015670 ~ 34018815 (+)

Expression


Co-expression Network