AMCG00009228


Basic Information

Item Value
gene id AMCG00009228
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29636991 ~ 29641912 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009228
CCGAGGTGGAGCATCCACATTCAGGTGCATCCCAGAGACCGCCGCGCTTCAGACAGTCCTGGGTGTGTGCCAGTGCTGAGCAGCTGCAAGGGCGAACTCCAGAGTTGCTTTTGGACCCTAGAAGAAGAGACTTGAATTAGCACAAGTTAGCCTGCTTTTTATTGggtttgctttgattttattGGTACACCATGGCAAACGCAGGGATGCAGCTTCTTGGTTTTACCTTGGCATTTCTAGGCTTCATCGGTTTCATAGCCTCCACGGCCATGTCCGAGTGGAAAGCATCGTCCTATTCAGGCGACAACATTGTCACCGCGCAGGCCATTTATGAGGGACTCTGGATGTCGTGCGTGTCGCAGAGCACCGGGCAGGTCCAGTGCAAAGTGTACGACTCGCTGCTGCAGCTGCCGGCCGCCCTTCAGGCAACACGAGCCCTGATGATTGTAAGCATCCTCCTCTCTGCCGTCGCCACGTTAATTGCTGCCACGGGGATGAAGTGCACAACTTGCTTTGGGGACAACAAGCAGACGAAAAACCGAGTTGCTACTGTGGGAGGAGCCATCTTCATCGTCGCAGGTATCTGTGCTCTCATAGGAACATCCTGGTACGCTAATAGAATTGCAGCAGACTTCTACAATCCATTTACACCTACCAATGCAagGTATGAGTTTGGCAAGGCTCTGTTTGTGGGCTGGGGTGCCGCAGCACTGTCCATTCTGGGAGGCTCCTTCCTTTGCTGCTCATGTTCAGGAAGGGGCTCAGGACAGCCTTCAAGTTACCCCAAAACACGCACCAGCGCCCCAGGGGGCAGAGACTATGTGTAGAGGCCAGAGAAACCCAGCAGAGCTCTGCAGCCATAGACTCATTAAAGAATACCCCAGACCTCATCACAGATTCAGGATTTTATAGACTTGGGGTCCCATTGCAGCTTGAGGAGTTTGGCTCTAAAGAGAGCCTGGTTCCACTTCTACaaaatttattatttctttatttaggtTTTATGCACAAGCAGTACATCTCTGTGTTTTGTAGTGCCATTTCAAAACCACAACCATGGGCCTATCCTGGAAGGATAGCCCCCAACTCTTTCAAATGATTGGGAATTAGGGATGCACCAAGCAGAATCACTCAACCCCCACACacatcttttaaatgttttctcttttgttcCTCTTCATGGGACTCcacacaaaacagaatataatttaaGCTTGTCTGCAGATATTATTACTCAGGACAGATTATTACAATTGTGTATAGATATGCTTTTTATCTCAATTTTGTATTGCTAAATTGTGAGGGATCTAAAGCACCATACCGCCCAAAGATCTACCCCATATGCCCATAATTTAAGGTAAACTGCGaactttatattaaaattgtgATTAACGATGATATAACTGACTGATAAAGAAGCAtacaagcatttattttcctcagcAGTTATACCTGGGTCCTGTACATTTCAAAGATAAATATAACCGGCTGAATGTACAAAAAAGGAGACATTAGATGTCCGGGCACATGACTTCCACACAGTGAATTGTGTGTGACAGGATAAAGTGATTTTTTAAGGTACAACAAGGAACAGCCAATGCTGTACTCCAAATGTTAACCCTCCCTGCTATcgaatattgtatattgtttgtagtttggatttgttttgtatcatGTTGTGTTATCGGTTcgtctttcattttgtttattttctaagtTCAATTTGTGTTATATAGGACTGAATGGGTTCATCATTTCAAGCTAAAGCTTGGGCTGAAATTAGCAGCCTACGCATTGCCAGTGCATAACCATAATTTTAAGGTTACAGATTATAGGTGATGGACTGGATTTAATTTCTGTCACTACTCAACTGTATTTTGTCGGTCTCAACTCTGgatttaatatgtgtgtgtatatatatatataaatatatagttcaGTAGGTTATAATTAAGCAACCTGCGACCTCTGTTATtaaggaaaaaacatgttttagaaaTCTTAATGTCAAACATGATCAACCGGGCCACTGTTGTGCAAGTACTGTACCgcatgaaaataaatgggtTATCACAACATGGGTCGGAATAGATGGTTTGTACTTTAGACTTGCTGTGCGAAGCTCAAGCACATTTTAAGCCACAGTGTTAAGACCAAATTTACACAATAGTCTTGTCTGAGAAAACTGAATGagagaaatgtatgtatttttggattgatttttaataaatgcaaacaaaaacttTGCTT

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009228 True 2250 mRNA 0.43 4 29636991 29641912

Neighbor

gene id symbol gene type direction distance location
AMCG00009230 NA coding downstream 49137 29573069 ~ 29587854 (-)
AMCG00009217 NA coding downstream 439848 29187536 ~ 29197143 (-)
AMCG00009216 NA coding downstream 465200 29163273 ~ 29171791 (-)
AMCG00009210 NA coding downstream 501840 29120415 ~ 29135151 (-)
AMCG00009211 NA coding downstream 533710 29090055 ~ 29103281 (-)
AMCG00009232 NA coding upstream 63421 29705333 ~ 29705803 (-)
AMCG00009234 NA coding upstream 266697 29908609 ~ 29927458 (-)
AMCG00009233 atp13a3,LOC106613657 coding upstream 288194 29930106 ~ 29955770 (-)
AMCG00009236 lsg1,LOC107573872,LOC107715771 coding upstream 349664 29991576 ~ 29998483 (-)
AMCG00009242 xxylt1,LOC106573863,LOC107718247 coding upstream 487876 30129788 ~ 30138314 (-)
G55488 NA non-coding downstream 178164 29458615 ~ 29458827 (-)
G55404 NA non-coding downstream 579750 29055713 ~ 29057241 (-)
G55359 NA non-coding downstream 743108 28843473 ~ 28893883 (-)
G55333 NA non-coding downstream 881358 28755298 ~ 28755633 (-)
G55326 NA non-coding downstream 909021 28721540 ~ 28727970 (-)
G55551 NA non-coding upstream 117615 29759527 ~ 29762165 (-)
G55610 NA non-coding upstream 333717 29975629 ~ 29976269 (-)
G55648 NA non-coding upstream 594247 30236159 ~ 30236395 (-)
G55703 NA non-coding upstream 838867 30480779 ~ 30483373 (-)
G55722 NA non-coding upstream 849326 30491238 ~ 30491980 (-)
AMCG00009215 gpr17 other downstream 573961 29057941 ~ 29063030 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other downstream 1246895 28385083 ~ 28390096 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 2018819 27613598 ~ 27618172 (-)
AMCG00009151 NA other downstream 2301260 27314317 ~ 27335731 (-)
AMCG00009148 NA other downstream 2483516 27110996 ~ 27153475 (-)
AMCG00009229 ccd50,LOC106613514 other upstream 19048 29660960 ~ 29704929 (-)
AMCG00009235 NA other upstream 336025 29977937 ~ 29990810 (-)
AMCG00009241 NA other upstream 607959 30249871 ~ 30256499 (-)
AMCG00009265 NA other upstream 957562 30599474 ~ 30657612 (-)
G55878 NA other upstream 1292652 30934564 ~ 30937251 (-)

Expression


Co-expression Network