AMCG00009229 (ccd50,LOC106613514)


Basic Information

Item Value
gene id AMCG00009229
gene name ccd50,LOC106613514
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29660960 ~ 29704929 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009229
ATGGACTCCAATAAGAAGCGTCTGGCCCCCGGGGGCAGGCTAAGCTGGGGCAAGGGCCACAGCGGCGACTCTGGCTCCAAGCCCGCTGAACAGGGTTTGCTGTCTGTGTCGCACGTGACCCCTGCTGACCCCTGTGATCTTCTGTTTGCAGTGTGCCGAGACTTCGCAGTGTTGGAGGACCATACGCTGGCGCACAGCCTTCAGGAACAGGAAATCGAGAGTCACCTGGCGTCCAATGTCCACAAGAGCCGTTTAGTGCAGCAGGACCTGCAGGTGGCCAAGAGGCTGCAGGAAGAAGAGGACCTGAGGGCTAAAGCTCGCATCCATAGACAACACAGAGACATAGAGAAGAGTGACAATGAAATTGCACAagaaatccaggagcagctagTAAAGCAGGCAGAGCAGCAACGACAGCAAGAAGAGAAAGATGAGGCTATTGCTCGCAAAATGCAGgaaaaagaaatgaaggaagagaggaggaggaagaaacaGCTTCAGGAAGTGCCCTATGAAGAGGAATACTATGAGGAGAAAGGAGACCGCGGCCGGGTCAGACACCCTGAGCACGAGCCTCTGGACCACAGGAGAGGGCGAAGGCCTCACAGTGGTGACAGAGAGCGTAAAATCAGGCCGGAGTCTCGCAGCTCACAGCTCACCTTCCACAGCGAGAGCGAAGAGAGGCACAGGAGGGACCGAGGGCATAGGTCTCCGCCGCACAGGGTTCAGGAGCACACAGACTCGGACAGGGTGGTGCGCAGGAAAGAGAGGCCACAGAGGCCCCCCCCGCCACAAAGCAGCAGAGATCACAGCAGGGAGCGCAGGAAAAGGGCCAGCCAGGAAGACGTTGTTCTTAGCACTAACAAAGGCTCATCTGTGGAGCAGAATGTTGACTTTGAGGACTATGGAGACCGGCAGAGGCTGGATGATGAGGTTTTTGAGGAGCACAGGCACaaaagggaggagaggagagagcacaAGGGCCGTTCTGAAGACAGAGCACTCACACATTCAAATGAGGACATACACCCCCGccacaacaaccaccaccaccaccaccacccccccagaGACACAGGTCGGAGAGTGCGAGCGGAGTACGGTGTGAGAGACGTGACTCAGGGCATCGCCCGCATGGACCTCAGAGAGCAGGAGCTCAAGGACCTTGAAGTGGCCAGGAGACTACAAGAGGAAGAGCTGAAAGCAAGCCACGTAGACAAGAGAGCAGCACAAGTGGCGCAGGATGAGGAAATTGCCCGGTTGCTAATGGAGGAAGAGAAGAAGgtttacaagaaaacaagagaTAGGGAAAAGGGCTGTGTGGACAAGAGAAGACCGGAGGGGGAGTGGAAGCAGGAGCCGGAGGAAGTTGTGCGGCCGCGGTCTCGGGAAGAGTACGAATACCAGAAACCCAGAAACCACAAACCAGCCCGGCCGCCACCACCTATGAATGACTATGAGAATGTGGATTCAAGATATGCATACCCAGGCTCCCCGTGCTCTCCCAGACCCTCCACCAGACCTGAGGCAGCATATAAAGGTTATAGGCAGTGACCCAGGCTGCCTGCCGAGattcttcctttgttttttttttctccatcatATGGTGTTGAAGAAGGAACCAGAAgcttccccccaaaaaacaagtCTTTCAGAGATGCAACTGACTTTCCCAAACCCGTTTGCTTTCTGTCtgaagagagagactgagaatCTCGGGAGATGTACAGCAAGAACAAGCACAgacaactttattttatttttattttctgattggCAATTCATCGAAAATGTGAAAAGGATGTATTCCTACATtgcttacatttacatttagaaggaaaaaaatgatcaTCCAAAATCATTGCAGAAGAGGGGCACCTGTAAGCTCTCTAACTGTTCAGTTTGAACAGGGCAATCCTGTGCAGGCCTGCATGAAGACGTACATCTTTTAAACTGGTCAGTTTTCTGTGTCTTATCTATCGCAGCGCATCAACAGTGTATTCGTTTATGGGCTTTGGATAATTCCAGATGGACGCTCACCAAAGCAATATTGATATCGATGGTGGCTCTGATATCATACCTCTTTGTGGTGCTTACATTATATACACTTTgtgctatttaaatattaataaaggcAACGACTGGAATTGCACACAAGGGCAGGCTTAAACAAAAGACCTAATCAGCCCAGATTTAAGAGATTTTTTCTCCCACCTGCATTTTACAGAAagctgtagtattttttttttatggtaacattttgtatttatgggGAGAAAGGTGAGGCAATCTGTACACCTGCTTTTGACACCTGGGCCTGGTGTGTCATAGCCTTTAAACTGTGACGGGAACATTCCTAATGAGGGACGtatgatgtatttaattaaaacaaatttcatCCAGTAGGTTTTTCGGTGGATGGACACATTCAGTTGACCATGggtaaatgcaaaacattttggtGTCTTGACGGTTATGAACATGctgaaaatgtgaacattttcacaaagtCACTAACCATTAAGTGATATGTTACTAAAGCACGATATGTCTACCCAAGatcatttgaatgcatttccaTTCCATGAGAAAAACTAAAGCACAATAACTAAAATAGTAACAATACCTCCTACtctgaggttttgttttgataacaTATCATTGAAAGTAACCTTTAAAGGGAACTATTTTCATAGCTGGATGCCATTCATAATCATGGTCTGTGAATTGTTGTGTAGCTTATTAGCCAGATTGTGTGGACCTGCAAGCAGCAACAAGTTTAGCAAGGTGACAACCCAGGTTAACTGTGGTGCCTTTTGTGAACAAGTTTGTAACAACAGTCTGTGATATGTATGCATAATAAGTAAGTGAGCATCATATTGTATATTCCTGTAAATTGTGATGTGAATTATATTGGACACAGCTGTGTATAGTTCAATTTCCATATGAATCTCTTTCTGTAAAGTACAAGTTACCGGTCTGAACTGGATCATACTCGGTCATCATGCTGGAACTGGGTCACTGAGTCATACTGTGCCCACACGGACCGAGTATCTCTTTAGGTCGGTATCGAGGTACTGTAACTGAGACCTTGAGATGGTGTGCGTCTTGGTGACAAAATCTGTCACTGGTAGAGAAATTATGCCagttgattatttttatatattttttaactttttaagaTAATTTGTCACATTTTTCCTCAATTTTCTTGTTGCAGCATTGACAGGCCATGGACAAATGACTTTACCCCCATTGCAGACCAGGgataaaatgcaatatattttaagtatttatatcTTAGAAAGcctataatgaaatacataaagaaCAAATGGTTTATgtcacattaatacattaatagttCTCCGTGCACAGCCCAGTGTTTTCAGTAAGATCAAGGTTTGGCACAAGCACCAATCTGCCAGACACGTGCATTTGTATAGTTGTCATCCTGAGAGGCCATTCTCCAGAGATGTTAGCTGAGTGCAGGGTCAGTCtccttgttttaaaaacaaaaaaattaaatggtgtatataaaacaaaaaggaagagaaataTCCCCTTAATGACTTAATAAAGGTTACTAACAAGTATTgcacaaatgtaaaaagaaaattaaattatagaaacaatgtcaggatttttttttgttttttttctcacaatttcaaatgaaaagctTAATTCtcggtttattttttattcatttgattttgtGTTATTGAAAGTGTTGGGGACACGGTGTTAATAGGTCTGTGaaggcaaaaataataattatatattttcaaaaaaactTCTGGAAACTCTTTTGGGGCCTACGAGCCTGCATTACTCTGTGatcatcaaatatattttttatttattatacctGTGTTTTGTCAAAATATGTGCTGTTTGTCAAGTTggtgagaaacaaaaacaaaggtcCTGCTATGGATTGTGTGCCAAATGTGTTTGTTCTACCAATGAAACTTGCAGGGTTTTTATCATTctaggatttaaaaatgtaagcttgttttaaactgttctgGTATTCAACATATTTATCAGCAACTGCTTCATTGCAACAATGCAGCTCCTACAGATGGTATTCTAGTATATAGTGCCCTCTATTGAGGCATGTGGAAGAATATCTGTGTCTTTGAATGGCAGTACAGGGAATAGAGACAAAGCTCTTCAAAATCAGATTTTATTCACTGGGCCTTATTCACCATCATGTGTAAGTGTGTTCATAAATTTAACACCTGCCTTTTCAAGATTTCAAGGCAAAGCAACTCCCAAAACCTGTATTGTTTGGTTAATCCTTTCAGACAGGAAAGAGTTCTGCAGCCTTTACATTTTCTGGATGCATGGGGTTATACTTCTGATGTATATTCAGTGTAGTGAACTTACTGTAGGATTCAAGATATAGCATGGACTCAAAGCCTTATTTAACAGTCATTTTATTATGTTGAACAATACAATGCCATTGAAAGATAGTATAATTACATATGCTCTGTAGTTGCTGCACGTGAAGTGAATATTATGGCATTTAATGTCATATTCCAATACATCtctatacatacagtacatctACAGTTGCATAGTCAGTTTGCGGTGGTTCCCAGAGAAAATGTCGAGATTTATGAGGAATTTCCAAACATATATCTTTAATACTTAACCTGAATGGCTCCCATTTTATCTTGGATATGTTCAGTATATTTTATGTAGCTGGGCAAACATGGCAGGGGAAGGCTTGTAGAGtttaccacattttttttttttttttttt
>TU69394
ATTTTGTCTTTCTAGTGTGCTTTCTTCTAGTTTTGCAGATCGTATTTACACCTGATTAATTGCCCTACAGGTCGGAGAGTGCGAGCGGAGTACGGTGTGAGAGACGTGACTCAGGGCATCGCCCGCATGGACCTCAGAGAGCAGGAGCTCAAGGACCTTGAAGTGGCCAGGAGACTACAAGAGGAAGAGCTGAAAGCAAGCCACGTAGACAAGAGAGCAGCACAAGTGGCGCAGGATGAGGAAATTGCCCGGTTGCTAATGGAGGAAGAGAAGAAGgtttacaagaaaacaagagaTAGGGAAAAGGGCTGTGTGGACAAGAGAAGACCGGAGGGGGAGTGGAAGCAGGAGCCGGAGGAAGTTGTGCGGCCGCGGTCTCGGGAAGAGTACGAATACCAGAAACCCAGAAACCACAAACCAGCCCGGCCGCCACCACCTATGAATGACTATGAGAATGTGGATTCAAGATATGCATACCCAGGCTCCCCGTGCTCTCCCAGACCCTCCACCAGACCTGAGGCAGCATATAAAGGTTATAGGCAGTGACCCAGGCTGCCTGCCGAGattcttcctttgttttttttttctccatcatATGGTGTTGAAGAAGGAACCAGAAgcttccccccaaaaaacaagtCTTTCAGAGATGCAACTGACTTTCCCAAACCCGTTTGCTTTCTGTCtgaagagagagactgagaatCTCGGGAGATGTACAGCAAGAACAAGCACAgacaactttattttatttttattttctgattggCAATTCATCGAAAATGTGAAAAGGATGTATTCCTACATtgcttacatttacatttagaaggaaaaaaatgatcaTCCAAAATCATTGCAGAAGAGGGGCACCTGTAAGCTCTCTAACTGTTCAGTTTGAACAGGGCAATCCTGTGCAGGCCTGCATGAAGACGTACATCTTTTAAACTGGTCAGTTTTCTGTGTCTTATCTATCGCAGCGCATCAACAGTGTATTCGTTTATGGGCTTTGGATAATTCCAGATGGACGCTCACCAAAGCAATATTGATATCGATGGTGGCTCTGATATCATACCTCTTTGTGGTGCTTACATTATATACACTTTgtgctatttaaatattaataaaggcAACGACTGGAATTGCACACAAGGGCAGGCTTAAACAAAAGACCTAATCAGCCCAGATTTAAGAGATTTTTTCTCCCACCTGCATTTTACAGAAagctgtagtattttttttttatggtaacattttgtatttatgggGAGAAAGGTGAGGCAATCTGTACACCTGCTTTTGACACCTGGGCCTGGTGTGTCATAGCCTTTAAACTGTGACGGGAACATTCCTAATGAGGGACGtatgatgtatttaattaaaacaaatttcatCCAGTAGGTTTTTCGGTGGATGGACACATTCAGTTGACCATGggtaaatgcaaaacattttggtGTCTTGACGGTTATGAACATGctgaaaatgtgaacattttcacaaagtCACTAACCATTAAGTGATATGTTACTAAAGCACGATATGTCTACCCAAGatcatttgaatgcatttccaTTCCATGAGAAAAACTAAAGCACAATAACTAAAATAGTAACAATACCTCCTACtctgaggttttgttttgataacaTATCATTGAAAGTAACCTTTAAAGGGAACTATTTTCATAGCTGGATGCCATTCATAATCATGGTCTGTGAATTGTTGTGTAGCTTATTAGCCAGATTGTGTGGACCTGCAAGCAGCAACAAGTTTAGCAAGGTGACAACCCAGGTTAACTGTGGTGCCTTTTGTGAACAAGTTTGTAACAACAGTCTGTGATATGTATGCATAATAAGTAAGTGAGCATCATATTGTATATTCCTGTAAATTGTGATGTGAATTATATTGGACACAGCTGTGTATAGTTCAATTTCCATATGAATCTCTTTCTGTAAAGTACAAGTTACCGGTCTGAACTGGATCATACTCGGTCATCATGCTGGAACTGGGTCACTGAGTCATACTGTGCCCACACGGACCGAGTATCTCTTTAGGTCGGTATCGAGGTACTGTAACTGAGACCTTGAGATGGTGTGCGTCTTGGTGACAAAATCTGTCACTGGTAGAGAAATTATGCCagttgattatttttatatattttttaactttttaagaTAATTTGTCACATTTTTCCTCAATTTTCTTGTTGCAGCATTGACAGGCCATGGACAAATGACTTTACCCCCATTGCAGACCAGGgataaaatgcaatatattttaagtatttatatcTTAGAAAGcctataatgaaatacataaagaaCAAATGGTTTATgtcacattaatacattaatagttCTCCGTGCACAGCCCAGTGTTTTCAGTAAGATCAAGGTTTGGCACAAGCACCAATCTGCCAGACACGTGCATTTGTATAGTTGTCATCCTGAGAGGCCATTCTCCAGAGATGTTAGCTGAGTGCAGGGTCAGTCtccttgttttaaaaacaaaaaaattaaatggtgtatataaaacaaaaaggaagagaaataTCCCCTTAATGACTTAATAAAGGTTACTAACAAGTATTgcacaaatgtaaaaagaaaattaaattatagaaacaatgtcaggatttttttttgttttttttctcacaatttcaaatgaaaagctTAATTCtcggtttattttttattcatttgattttgtGTTATTGAAAGTGTTGGGGACACGGTGTTAATAGGTCTGTGaaggcaaaaataataattatatattttcaaaaaaactTCTGGAAACTCTTTTGGGGCCTACGAGCCTGCATTACTCTGTGatcatcaaatatattttttatttattatacctGTGTTTTGTCAAAATATGTGCTGTTTGTCAAGTTggtgagaaacaaaaacaaaggtcCTGCTATGGATTGTGTGCCAAATGTGTTTGTTCTACCAATGAAACTTGCAGGGTTTTTATCATTctaggatttaaaaatgtaagcttgttttaaactgttctgGTATTCAACATATTTATCAGCAACTGCTTCATTGCAACAATGCAGCTCCTACAGATGGTATTCTAGTATATAGTGCCCTCTATTGAGGCATGTGGAAGAATATCTGTGTCTTTGAATGGCAGTACAGGGAATAGAGACAAAGCTCTTCAAAATCAGATTTTATTCACTGGGCCTTATTCACCATCATGTGTAAGTGTGTTCATAAATTTAACACCTGCCTTTTCAAGATTTCAAGGCAAAGCAACTCCCAAAACCTGTATTGTTTGGTTAATCCTTTCAGACAGGAAAGAGTTCTGCAGCCTTTACATTTTCTGGATGCATGGGGTTATACTTCTGATGTATATTCAGTGTAGTGAACTTACTGTAGGATTCAAGATATAGCATGGACTCAAAGCCTTATTTAACAGTCATTTTATTATGTTGAACAATACAATGCCATTGAAAGATAGTATAATTACATATGCTCTGTAGTTGCTGCACGTGAAGTGAATATTATGGCATTTAATGTCATATTCCAATACATCtctatacatacagtacatctACAGTTGCATAGTCAGTTTGCGGTGGTTCCCAGAGAAAATGTCGAGATTTATGAGGAATTTCCAAACATATATCTTTAATACTTAACCTGAATGGCTCCCATTTTATCTTGGATATGTTCAGTATATTTTATGTAGCTGGGCAAACATGGCAGGGGAAGGCTTGTAGAGtttaccacattttttttttttttttttttttaatctcttattTTCAGGGAAGAGGgtttattattagtgttgttaCCATTTCATAGCTTCCTCTACCAGGTATTTTAACTTCACTTTGATTCGTTCAGCAGATGCTCTATTCAGGAAGGATGGGTATAAGAAGTAGCACAACTTTATTACTGTTAGGGGGTAAGCCTGAAGTAGGTCTGCCAAAAAGAAACTGCAAACGGGCAGTTACTCCATGTTTATTAGGTCTGTGCGCTTTGAAAGCCTGTAGTTATCTGCTGTTGGCTTCTGGTCACAGTGAACATATTTACATAGATGTGCATGGCTGTGCTGTAAAAGTATTAAACCACAAGTGTATGCAAACTTCTGTTGGATTTACTGCGGATGGGCTTGTTTTCTTACAGCatctattgttttttgttttgtttttcggtTTGTCACCTCACACAATCCTTTTATAGAAACCTCTGTCcttaatgtttttgtgtaatttctCTATCTGATAATCCATATCTCCCATCGGGTTGATATGTACCAAAGGGCAAGCCAGATCGGCATTTCTTCAAAGGATATCGGCATCAAAACAAATGATAATGTATTACCATCTATTCATTCatgaaattcagtgttagcCTTCTTTCTGCTTTGGTAAATGTCACTCTAAATTAAGCTGTATGGTCTTATCCAAAGACCTAAATTAGCTTATAGTCAAGTATTTGTTGGCATAATGCAATTCATACTGTCAGGAGTTCCAGTTTTATAgtcatttgtaatataaaatgataaaaaaaaaaaaaaaaaagaggtttgGATTCTAAAATACGTCGTATTTTTtgataatatatttactttttattttaaggttacATGTCGAAAAaccttttaaattgaaataatctACTATTTATCatacaaaatttgaaaaaaatcataTGGCTTGCCCTTCCCCAAAACCTCAGGTTCAGGTTAAACTGGTTTTATACCGTGTTTCTGCAGACAAGCAGTCTAGTCTGTTACAAAGTTCATATTCACACAGGTTTTGCTTATAGCACCAATCGTTTTTCTATCCTGTTCAAAGCAGGTTCGTTTATTGtttgtaataatttatattggagtatatttctttttaaagtgaacatcatcaatagcaatattttttattataaagcaCAAAAACACTCATACATATCACTATCAGTATTGTTTTCTCATAATCCCTACAGATGTTAAATCTCCTGgagtagaaaacaaacaaacagaaacacagcttTACAGAgaatttaagtgttttgttatCAATCTAGCCTCCGATaggcattcattttaaatgcacagcaTTCAATTTATTGTGTGTTGCTTGTACACATTGCATTTGCATCTGTAtgcattgtttcattttgtgttgtcGATGTTTCTTTTGGCCACTACTAGTGAATAACAATTAAATCtgccatttttgtattttgttttactgtgctggtgtgatttaatattaaaatgttgtttctggAAGACACATGGAACGACATTTCACAAGAAgctattttgtctttatttttgataaaccggtttttgttttttctttcatatttttatattatttttgcactAGTGTAAAGAATGTGCTTGTTGAAGAAgactgtattgtaatgtattggcTGCTTAGAGCAATAAAGTCATGCTTAGAAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009229 False 4774 mRNA 0.43 12 29662629 29704929
TU69394 True 5435 TUCP 0.37 6 29660960 29670337

Neighbor

gene id symbol gene type direction distance location
AMCG00009228 NA coding downstream 19048 29636991 ~ 29641912 (-)
AMCG00009230 NA coding downstream 73106 29573069 ~ 29587854 (-)
AMCG00009217 NA coding downstream 463817 29187536 ~ 29197143 (-)
AMCG00009216 NA coding downstream 489169 29163273 ~ 29171791 (-)
AMCG00009210 NA coding downstream 525809 29120415 ~ 29135151 (-)
AMCG00009232 NA coding upstream 404 29705333 ~ 29705803 (-)
AMCG00009234 NA coding upstream 203680 29908609 ~ 29927458 (-)
AMCG00009233 atp13a3,LOC106613657 coding upstream 225177 29930106 ~ 29955770 (-)
AMCG00009236 lsg1,LOC107573872,LOC107715771 coding upstream 286647 29991576 ~ 29998483 (-)
AMCG00009242 xxylt1,LOC106573863,LOC107718247 coding upstream 424859 30129788 ~ 30138314 (-)
G55488 NA non-coding downstream 202133 29458615 ~ 29458827 (-)
G55404 NA non-coding downstream 603719 29055713 ~ 29057241 (-)
G55359 NA non-coding downstream 767077 28843473 ~ 28893883 (-)
G55333 NA non-coding downstream 905327 28755298 ~ 28755633 (-)
G55326 NA non-coding downstream 932990 28721540 ~ 28727970 (-)
G55551 NA non-coding upstream 54598 29759527 ~ 29762165 (-)
G55610 NA non-coding upstream 270700 29975629 ~ 29976269 (-)
G55648 NA non-coding upstream 531230 30236159 ~ 30236395 (-)
G55703 NA non-coding upstream 775850 30480779 ~ 30483373 (-)
G55722 NA non-coding upstream 786309 30491238 ~ 30491980 (-)
AMCG00009215 gpr17 other downstream 597930 29057941 ~ 29063030 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other downstream 1270864 28385083 ~ 28390096 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 2042788 27613598 ~ 27618172 (-)
AMCG00009151 NA other downstream 2325229 27314317 ~ 27335731 (-)
AMCG00009148 NA other downstream 2507485 27110996 ~ 27153475 (-)
AMCG00009235 NA other upstream 273008 29977937 ~ 29990810 (-)
AMCG00009241 NA other upstream 544942 30249871 ~ 30256499 (-)
AMCG00009265 NA other upstream 894545 30599474 ~ 30657612 (-)
G55878 NA other upstream 1229635 30934564 ~ 30937251 (-)
G55881 NA other upstream 1239438 30944367 ~ 30947211 (-)

Expression


Co-expression Network