AMCG00009230


Basic Information

Item Value
gene id AMCG00009230
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29573069 ~ 29587854 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009230
ctttctctctctgtctctcagttgAACCATGCGGAAAaggcagcagctgcagcccaCACTTATTTCCAGGCAAATCCAGAGCATGTGGAGATGTGGCACAACCTGGAACACTACAAGCTCCTGGATGGAGTTGATGAGAGCTCCTTCTTTGACAGGGAAGCAAGGCCACATCAGCAAGCCTTCACAACAGGCGTGAAGCACTACGACAAGGGGGACTTTGACAAGGCCATTGAGTTCCTGGAGGAAGCCCTGGTGGAATACTACAAGGCGGATGTGGAGTGCAGGGCGCTGTGTGAGGGACCCCAGAAATTCGATGAGCACGAGTATCTGCAGTACCGTCCAGGCCTTTATAGAAATATTGCGGATCACTACACACAGATCCTGGCGTGTGAACACGAGTGTGTTAGAGACCTCGCTACTCGGCCCGGCCGGCTCTCCCCGATGGAAAACTACCTTCCTCTGCACTACGACTATCTCCAGTTTGCATATTTCAAAGTGAATAAGATTGCAGAAGCTTTGGAAAGTGCCAAATCCTACCTGCTGTTTCACGAGGGAGCGGAGTTCATGATCGACAATTTGGAATTTTACAAGGAGGTTCTGGGTCAAGAAGGAGCTCCCCGGCAGgaGGCTGAGTGGTACATCCGACGTCACCGGCATGAACTGGAGGTCCTCCTGATCGGGACGGATAATCTGGGCGTCGATTACACGGAGCCTAATTACTGGAGCAACACCGGCGGAAGAGAGGATGTGAACAGGCAAGAAACATGGGTGGCTGGAGTACGTGGGCCGCTGTTGTATGATGAAGTACAGCTGGTGCTCAACTCGTCGGCGCTCAACGGGAGCCAGCGGGTCTTGTTCGACAACATCATCACTGAGGAGGAGTGCGTGGAGCTCAAAAGTGTGGCGAACACAATCACGATTGCGGGCGATGGCTACAGAGGAAAGATGTCTCCTCACACTCCCAATGAGAAATTTGAAGGTGCAACAGTCCTTAAAGCATTGCAGTATGGCTACGAGGGACGCGTCCCGTTAAAAAGCGCCCAGTTGTTTTATGAAATCAGCGAGAAGGCCAGGAAAATCGTTGAATCTTACTTCATGCTGAACTCCACGTTATACTTTTCATACACTCACCTGGTGTGCAGGACTGCTATCCAAGGCCAGCAAGACCACCGCAACGATCTGAGTCACCCGATCCACGCAGATAACTGCCTCTTAGACCCTGAGGCCCACGAGTGCTGGAAAGAGCCGCCTGCCTACACCTACAGGGATTACAGTGCACTTTTATACCTAAATGGAGACTTTGATGGAGGGGAGTTTATTTTCACTGAAATGGATGCAAAGACGACAACCGCATCCGTAAAGCCCAAGTGTGGCCGAATGGTGGGCTTCTCGTCAGGAGGAGAGAACCCCCATGGTGTGAAGGCGGTGACCAGCGGGCAGAGGTGTGCCGTGGCACTGTGGTTTACCCTGGACCCTGTCTTCAGAGAGCTGGAAAGGCTCCAAGCGGATGAAGTGATCCAGTCCATAGAGACCGGCCATCAAGAGCTTATATTAAACCCCAAGGATGAGCTGTGAGAGGAACtttattatctatttattgAATTACCTTGATCcaaaacagcaaaacagaatgctttatttttgtactgttttaatGTGCACGTTTTTTAAGGCAGTGTGAATTCCCAGAGACAATCGGTGAGCTCCTCATGGCAGTACTGGAGTACACCTTcttttgttcagttttccttttttcattcgTGTCATACTCGCCCGCTGCAGTCACCCAGGTGCAACACTTAATGTTGCCTTTCATCGAACGCTATTATAATTAGAAGTATGTTTTGGGGGAAATGTTGAAATTGTACGGAAAATATCCTTGAGTCGTAGTGTCTGGCTTTCAGGGATGTCTCCTCATGTTGGGTTAAAATTACTCTGCTAGTTTCATACACTAGGGCAAATTTCCCCACTATATTGGaaaatcaaaagacaaaaaagataACCATAAAGGAAAGTATATCAGAGTGagagaaatatacatttccttaaCTACACAAGTGTTGGTTGGCcaacacaaaatgtgtacatgtagTTTTTCTACCTTTAAAAGCCAAAAGGCTTTAGTTTAGGTTAAagattcaaaattaatttacacCTTTTTAAGTCtccatttataaaaaaaaataaaaaaaatggcaggtacaaaaaagttaaatgtgaGATGAAGCAAAACCAAACCGTAGGCTTTCAGGTAACGTCAGCCACTACTACTTGATTGAATCGCCTACTGAAAACtattgctttttcagttttcacttgaaacagacattttaaagctGCTAACTTGGATTGAACCGAAGTTCTAATAATGGCTAATAAATTTACAGCatcttttcagtttaaatgtgttCCAGCTTTTATCCAAGAATTACAAATCCAAGTAATCGCTTTAAAAGGGGCATTATAATCCTGTTGAATTTTTCTTGATTGggaaacacaatgttttttcaGTATTACTCGGTCCAAAAGTTGTCTTTATCCCCAGGGTAATTTTTTAATCTTAAGGTCACTatattaaatggttttattttgtttcctcattatttatttgtatagtgttGTGGAATGCTTAAATACATTGTTGTATGCAAATTGACTATTTAAATTTATactaatgtattcattaatgtgCAGTTTGGTTGTACAATCTTGTTCCTACTACTCCACAGAGCAGCCCCTGTTTTatgaaatgctgtgaagtgtTACATTTTGTATCAAACTCCCCATTTTCTCCGTTTGGTTTGGGGACACATTATCCCACTGCATTGTCACTTGAACTCAGTCAGACTACAATATTTAAGCAAGAcgatatttaaataatacctCAGAGAAAGGATACATAGGCAATGTGATCAAGTCAAGTGATTAAGAGTAGATCTTTAAGCTGAAATGGCTGCTTCCACAGACCTCGATGGGTTTGTGAAACCAGCCTAAAGTGGGTTTGTGGAATTGAAATACCATTAAGAAATCAGAATGCCTGGGTGTGTTAAGAATAGATAGCTGCTACTGTAATtgtaaactttatatttttagatattttattaaGAAACTTGTATTATTCCTGTTTCAAGGAATTTTAAATTTGAGGTGGCAATCggtaattgtttcctttcaaagaaGCCATGTTGACTGGTACCTTTTACTTTTTGTCCAATGGACACTTTGAAGTGCTATCTTGCTCACTGTACTATTTTACTGGTTTGAGCATCCactatatcatttttaattttagttcaaTTTTCAGTTTTGGTAGAAAGGAAGGCCGCTCTACTGCTATTGTAAGGTGGAGTATCTGTAGCAGACTGAAAATGATGATGTagcctgtttttgtttcactttgttGTGTAATGCATATGTACATGTGTTGAAACTCTGTTGCATTTCAGTGATGGTTTTccttatgcattatttaattaagttattgttAGTCTAGTTTGATTCcgcaaataaatatttttcacgCATTTCTCCTGCTTCTAATTTCCTTTTTGAACTGGGCTGGTGTTAATGGGGGAGATGACATGGTTTTCTGACATTCAACCAGGTCCACTGGAACAAAATCATTTGAGCAAATCAACTGCACCCTATTCCCAGGTCTTAAGCAGGTAATGACTTTAGTGTAAGACTGGCCTACAGGACCACAC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
K22459 P3H2; procollagen-proline 3-dioxygenase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009230 True 3704 mRNA 0.42 14 29573069 29587854

Neighbor

gene id symbol gene type direction distance location
AMCG00009217 NA coding downstream 375926 29187536 ~ 29197143 (-)
AMCG00009216 NA coding downstream 401278 29163273 ~ 29171791 (-)
AMCG00009210 NA coding downstream 437918 29120415 ~ 29135151 (-)
AMCG00009211 NA coding downstream 469788 29090055 ~ 29103281 (-)
AMCG00009213 NA coding downstream 483666 29063763 ~ 29089403 (-)
AMCG00009228 NA coding upstream 49137 29636991 ~ 29641912 (-)
AMCG00009232 NA coding upstream 117479 29705333 ~ 29705803 (-)
AMCG00009234 NA coding upstream 320755 29908609 ~ 29927458 (-)
AMCG00009233 atp13a3,LOC106613657 coding upstream 342252 29930106 ~ 29955770 (-)
AMCG00009236 lsg1,LOC107573872,LOC107715771 coding upstream 403722 29991576 ~ 29998483 (-)
G55488 NA non-coding downstream 114242 29458615 ~ 29458827 (-)
G55404 NA non-coding downstream 515828 29055713 ~ 29057241 (-)
G55359 NA non-coding downstream 679186 28843473 ~ 28893883 (-)
G55333 NA non-coding downstream 817436 28755298 ~ 28755633 (-)
G55326 NA non-coding downstream 845099 28721540 ~ 28727970 (-)
G55551 NA non-coding upstream 171673 29759527 ~ 29762165 (-)
G55610 NA non-coding upstream 387775 29975629 ~ 29976269 (-)
G55648 NA non-coding upstream 648305 30236159 ~ 30236395 (-)
G55703 NA non-coding upstream 892925 30480779 ~ 30483373 (-)
G55722 NA non-coding upstream 903384 30491238 ~ 30491980 (-)
AMCG00009215 gpr17 other downstream 510039 29057941 ~ 29063030 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other downstream 1182973 28385083 ~ 28390096 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 1954897 27613598 ~ 27618172 (-)
AMCG00009151 NA other downstream 2237338 27314317 ~ 27335731 (-)
AMCG00009148 NA other downstream 2419594 27110996 ~ 27153475 (-)
AMCG00009229 ccd50,LOC106613514 other upstream 73106 29660960 ~ 29704929 (-)
AMCG00009235 NA other upstream 390083 29977937 ~ 29990810 (-)
AMCG00009241 NA other upstream 662017 30249871 ~ 30256499 (-)
AMCG00009265 NA other upstream 1011620 30599474 ~ 30657612 (-)
G55878 NA other upstream 1346710 30934564 ~ 30937251 (-)

Expression


Co-expression Network