AMCG00009233 (atp13a3,LOC106613657)


Basic Information

Item Value
gene id AMCG00009233
gene name atp13a3,LOC106613657
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29930106 ~ 29955770 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009233
GGAGGCTCCAGGTCTATTGTAGCAGCCAGAGGGACTTCCCTGGTCTCTAGTGGGATTGTGTTGCACAGGTGACTGCTCTCAGGACCGGGCTGAACAATGGAGAAAGAAGATGTGAAGATTGTGAATAAGGGGCAGGAGGATGAGATGGAGATTTCTGGGTACAGGCTGTCTCGCTGGAAGCTGGCGCTGGTTGGCGTGGGGGTGGTCTGCACCGGGGGCTTCTTGCTGCTGCTCCTGTACTGGATGCCAGAGTGGTGCGTGAAGGGCACCTGCACCAGGACAAGTGTCCGAGAGGCCGAGATGGTGCTGCTGAGATCCACTGATGAGTTCAAGAGATGGTTCAGAGCGAAGGTGCGAATCATGCTGGCTCCAGGGAAGGGCCCCTTTGCCAGCCTGGATTCCCAGACGAACACAGCTGTGGCCAATGGTCACTCCCCCCGGTCCTCGGACACCCCCCCAGAAGAATTTGAGAAGAAGTATGCTGAATACCAGCCTGTGCAGaTCCGCCATTTCACTCTCCACAGTACAAGATACTATTGGAACGATACAATCCAGAATTTTGTAGTATTCAAGGGCTTGGAGGATGAGAAAGTCACCTGCTCCTCCATCCACGATGACCACAGCACAGGCCTGACCAAAGACCAGCAAGAGTACAGGCGATTGTTTTTTGGAGTGAATGATATCGCAGTGAAAGTGCCTTCAGTTTTCAAGCTGCTAATTAAAGAGGTTCTCAACCCTTTCTACATCTTCCAGCTGTTCAGTGTTATTCTTTGGAGCGCTGATGAATATTATTACTACGCTGCAGCCATTGTGTTCATGTCCGTCATATCAATAGCTACCTCTTTGTACACCATCAAAAAGCAATATGTTATGCTGCACGACATGGTGGCAACCCACAGTATTGTACGAGTTTCTGTCTGCAGGGACAATAATGAGATAGAGGAAGCCATGTCCACAGAGCTAGTTCCAGGTGAAAGTGTGCCAGTCACAAAGACCAACCTGCCCAACCCGGGCAAGGGGCCGAAGGGAGCGGAGGGCGATGCAGTCTACAGCACAGAAGAGCATAAACGCCACACACTCTTCTGTGGAACCAATGTCATCCAGACTCGCTTTTATTCAGGGGAGCTTGTCAAGGCTGTCGTGGTCAAGACCGGCTTTAGCACAGCCAAAGGACAGCTGGTGCGCTCAATCCTGTACCCGAAGCCGACCGATTTTAAGCTGTACCGCGACGCCTACCTCTTCCTGTTGTGCCTGGTGGCTGTGGCTGGGATTGGCTTCATTTACTCCATCGTCCTCAGCATCATGAACGAGGTTCCAGCCAAAACCATCATCATTGAGTCCCTGGACATCATCACAATCACTGTGCCACCTGCGCTGCCTGCCGCCATGACAGCTGGCATCGTTTATGCCCAGCGCCGCCTCAAACGCATCGGCATCTTCTGCATCAGCCCCCAGAGGATTAACATCTGTGGCCAGCTAAACCTCATCTGCTTCGACAAGACTGGCACACTCACTGAAGATGGATTAGATCTATGGGGCATCCAAAGAGTGGAAAATGGCAGCTTTCTCCTCTCTGAAGAAAATGCCTATAAGGAAGCCCTGGTCAAGTCTCAGTTTGTGGCCTGTATGGCCACTTGCCATTCTCTCACCAAGATCGAGGGCGAGCTCTCTGGAGATCCTCTTGACCTCAAAATGTTTGAGGCAACTGGCTGGATCCTGGAAGAAGCCACAGAGGAGGAGACCACCCTGCACAACCGCATCATGCCCACTGTTGTGCGGCCGCCCAAACAGCTTCTGCCCGAACCCATGCTCTCCACCGAGCAGGACATGGAACTCTATGAGCTTCCGTCGTCCTATGAGATCGGGATTGTGCGCCAGTTTCCATTCTCTTCGGGCCTGCAGAGGATGAGTGTGGTGGCGCGGCTCTTGGGCGAGAAGCGCATGGATGCCTATCTGAAAGGGGCACCCGAGGTCGTCGCCAGCCTTTGTAAGAAGGAAACAGTGCCTGAGAATTTTTCGGACGTTCTGGAGGAGTATACTAAGCAGGGCTTCAGAGTCATCGCCTTGGCTCACCGGAGACTGGAATCCAAACTCACCTGGCATAAAGTGCAGAACATCAACCGAGATGCCATTGAGGTGAACATGGAGTTCCTGGGGATGATTGTAATGCAGAATAAACTAAAGGCCGAGACTCCATCTGTCCTGGAAGACCTTCGTAGAGCCAGCATTCGCACTGTAATGGTCACAGGTGACAACATGCTGACTGCTATTTCAGTGGCGCGGGACTGTGGGATGATCCTGCCCCAGGACCGAGTCATCATTGCAGATGCTCTACCTCCCAAAGATGGCCACGCAGCCCAGATCAATTGGCACTATGCAGACAACCCCACCAAGCATGCCAGCACACTGAGCCCACGCTTTGAAGACATTCAGATACAGCTGGATGAGGACGGCCCTGGAGATGAGCACAGTGCCATGGAGCACTATCACTTCGCCATGAGCGGGAAGTCCTTCGCTGTcataacagaacattttcaagaTCTCGTACAAAAGCTGGTCCTGCGCGGCACAGTGTTTGCGAGAATGGCTCCGGATCAGAAGACCCAGCTGGTGGAGGCGCTGCAGAGCGTGGAttattttgtcgGGATGTGTGGTGATGGTGCTAATGATTGCGGGgCACTGAAGAGAGCTCACAGTGGGATCTCCCTGTCTGAACTGGAGGCTTCTGTGGCCTCACCTTTCACCTCCAGAACACCCAACATCTCCTGTGTGCCCAGCCTCATGAGgGAAGGGCGAGCAGCACTGATTACCTCTTTCTGTGTGTTCAAGTTCATGGCTCTGTACAGCATTATCCAGTACATCAGTGTTACTCTCCTTTACTCCATTCTGAGCAACCTCGGGGACTTCCAGTTTCTCTTCATTGACATAGCTATCATTCTACTTATTGTCTTCACAATGAGTTTAAACCCAGCCTGGAAGGAGCTGGTGGCACAGAGGCCTCCATCCGGTCTCATTTCTGGGCCTCTACTGTTTTCAGTCCTCACTCAAATCCTCATCTGTCTGAGCTTCCAAACACTGGCTTTCATCTGGGTAAAAAAGCAGCCGTGGTATGAGGTCTGGACGCCGAGCTCAGATGCCTGTAATTTGTCCAGCACTGCCCATTTCTCCCTTGATCATAATGAAACGGAACATGATGACcacaacattaaaaactatGAGAACACTACAGTCTTCTTTGTGTCAGCCTTCCAGTACCTCATTGTAGCCATTGTCTTCTCCAAAGGGAAGCCATTCAGGCAGCCAAGCTACAAAAACTggCCATTTGTCTTGTCTGCAATCATATTGTATGCCTTTCTGCTCTTCATCCTGTTTTATCGAGTGGATGGTATCGACTGGTTTCTGGAGATTGTGTGTGTTCCCTACCAGTGGCGCATCACAATACTCCTCATCATTGCAGTTAATGCAGCAGTGTGTATCCTGATGGAGACCTTCATCCTTGACATCATCTTATGGAAGCTTGTGTTCAGCCGCGACAAGCAGGGCAGCTATGGCGTCACCTCTGCCTCACAGACACCACAGAAGGGTATTGACCTGACGGGATCCAAATTCCTGCCCTGGCTCTGTTGCAGAAAGAGACGGGCACCCAAGGCTCGCTACATGCACCTTGCCCAAGAGCTGCTGGTCGACCCTGACTGGCCGCCCAAGCCCAAAACCACAACTGAAGCGAAAATGCCCTCTAGCCCTGAAAACGGCTCTTACCAAATCATTTCTACTTCATAGCACTCCCGTTGTCATTGAAGTGAccaaaaaacagtttttcaggAGGAgactcttctttctttttctttttctttctttctttaaatggaaacaatatCATTTGATCAAAAGGGttgaacttttaaaatacaggaaCCTCGGAACTGACCGGCATTGTTTTGCGTCTCAAGGAATGGCAAGAGCGCAACTCTGCTTTGAATGAAAAATAGTTAAGTTAATTCTCTCCTTGTTCACTGCTGCTCACCAACTCTTACTGTAAAATGACAGGAAATGTTCAAAGTTGGGAACCGTGGAAGTTTTGTGGCAGAAGCTCGGGGTTATTTTAATTGGTATTAGTTGTTACAATATAACTTTCTTTAACAACACTAAATTTAACTGTAGTCTGTTCAACAGCACATTATATGGAGTGCTATGGTCATATGAACTGAAGATCCCGTGCTTATTTAACTTCACTTGGGATCATcaaaaaaagattgaaaatatatctgaatactgtgtgttttttataagGAAGGGATCTGAGCATCTTTGCATCAGGGTGAATGGTTTAGGGTACTAAAGCTTCACAAGCACAGGTTGCAGTTTGCTCTGGGAAGCAGTGAAAGTTTCTCCTGCAACAGTCAATTGGTTTATAATGTACAGATTATGCTAAATTCTGGCATTTGGCTCATGCTCTTCATTGCTTATTTTTCACTATTTCTTCCTATGGAAGAACAATCAAGAATGATAATCAAGGCATTATGAGCACCCCTTGCAATATGATACGCACAGTTGAAACAGGCACAGTTCTAGAGTGATGTTTTATTTGAGCAGCATGCCCCTCACTGGATGTGTTGTCAAACTCACCCTGCGGGGTAACCGGATCTGGTTTCATATTCTTTGAGAGTAGAGATTTCTCTGCTCTGATCACTACCAATTTCGGCAGAGTTAACAGGTTCTTGGTTGCTTTATGACCACAAATTATACAGAGTTCAATGAATTCTCCAATTGATAAGGGCTATTAACTGACTGAACTCCTATAATTGCAAGACCGGGTCAACCGATTCTGAACAGCTGAATTAAGAAAGAGCTGAACAAACGAACCGCCTTCAATAgtatttatacaatttatataacttttatatttaaaaataagtaacttAAGCCCTTATTAGATAGTTAGTCTGACTCATTTACCCTTGATCGAGCTTGCATCTGAAATAAACTTTGTTACCTCAATCGTTTCTTCAATTATAGATTACAGATATAAGAGTTTATTCATCAACGTTCACATGTACAGGTCTAAAATTATTTCTCGCTAGTTTAATTTTCCAGTCATTGTAACATATCTTTTGGACAGCATATCATGGTAAAGCCAgatattttttcagaaattatGTATCTAGTATTATTAACACAATATATTCATACACCTATCCAAAATGGTCACATCAGATCAACCATCGTTTATTTATCTAGTTCTgtataaacacaaaaactgtaattttcaaATACTGATACCTTCATGTAAAATTTACaatcttcctttttttctcaCTGTCATTCCCAACGAATTTAGTAGTGCACATTATTTCGGAATTTGGCTGTCACACCCTTACATAATCTATCtctgtcattatatatatatatatagatatatatagatatagatatagatatatatatatatatatatagataaccttcatgttcagttttaaataacatttaaaaccataattGACCCGCAGTTTATTCTAAATTTGTTATAATTTAATGGTCTTAATCTTGTCTAAACTGGTAGTCTTTCATAAACAAGGGAAGATCAGGTTTATTATGCATTTACGTTTTCAGCCCTACCCACCTATAGATAACAGACTTCTGGTGAAGTGAGATCATAtcttatactttttatttattaaatgcaaaagaaaGCCTAGTAGCACAGCCCCTTATTACTAATGAACCCTGTAAAATACAGATCGGTTTGTACAAGCCTAGCtttcttcaaattgtattgactGTGAAAATCTCATACGTTTGAAATATTCACTCTCAATACAAGAggtaaattaagtaattaaatgaAGTCTTTGAATCACCATCCATACACACAAACCATGACCATTATATATTCTtgtgggatttgttttgttgcctGTATATTTGTATGGGACATGGATGTACATTTATGTTTAAAGGTATTACAATTAAAGAGTTTTGAGATGGAAAGGAAAGTATATCTTTAAACTGTTCAATACCAAGTTCAGTTTTCAATTAGGGcaaatgctttgtttgtttgcattgttttcatttcttactTTTTGTTGGTACTGTTTTGGATATTGAATTGTCATGATCAACTCTGTAAATTTTGTGATGTCTGAAATTATGCAacgtgtttttattgttttagtaaaataaatttgtagagagaggtttttttttttttttttttttttaaagcttagttgcagaaattgtttttttggaCTTGAAATGTGTTTCTCAAGAAGTAGCTTTGACCCAAGAAATGGTTGTGAAATTAtacctctctctcttactcttagcaacatgaacaacaacaaaatccaagTATACACATAAAAGTAAGCTAATCTGATTGAAAAGTAAACATTCTTGCCCACATAGAAATTTAAGGGACTTCTTAAATACAGAGGACCAGTTATTTTGCCCTTCTTAGGACCCCAATACACTTCTCACTTCTCCATGCTACGTTCACGCTCTGCTTGCTTAAACTCCCCTGGCACCTCGGTACTGTAATCACAGTTCCTATGAAAACCTGATTGGCCTTtcaattaaaatcttaattaacaaaatatctgAATCACTCAGATCAGAACTTTATTCTCATCCGAGAGATTCAGGCCATGCTGCTGCAAAGTGTAGGCAAGACGGACTAGGGCAAGGGTGGCTAACCCagttcctggagagccccaatcctgcaggttttccaggtctctgtAAATCACCAATCACTGGATACATTGAACACccggacattttgcctaattaacaCCCACAACTGGCTCAATTAAGCATTTAACGATCTagatagaacaaaaacctgctCAAGACCAGTGCTAGCCACTCTCAGGACTGGGGAATGGATATATGTATGCTGAACCAGCAAATGCACAAGAATGCATGGCACAAGAGAaacattacaacattttatatcctacaaacatcttggggaggcattcatccagcagtggatcgatatagatGGAAAATCAAATTTTAAGCTACCATCCTTAAATTAGTGATGCCCAGAATTGTACAACACTTTCTGCTAGAaacttttgtacttttttattttttcataaatctGTGGtcgttttaattgtttttatacattgtttaaaggGAGCGACTGTAATGTTTGAGCTTGAAAtactattaaaacatatttgcaaacTCCTTTATAGATGTGAATCAAGTTTTATTTATGAGAAAAGATGATTGAATTCATAAGTTGCTAATCATCGCAGAATAATAATCATGGTATGTGCTGAAGAACATTAACAGGTACAAGAAATCTATTTTAACCCATTTCAGTTGTTTGTCTCTccattgaaatgtaatgctCTCTGTatgaggaggggggggaggaTTTGGGAAACCTGctgaaatgtatagaattgaCCCTTTATTATAACATGAGGTTATGCTGTCagggaaattacattttgtaaaaaaagaaaaaaaaaaaaaaaaaaagatcaa

Function

symbol description
atp13a3 Predicted to enable ATP binding activity and metal ion binding activity. Predicted to act upstream of or within cation transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP13A3 (ATPase 13A3).

NR:

description
PREDICTED: probable cation-transporting ATPase 13A3 isoform X1

GO: NA

KEGG:

id description
K14951 ATP13A3_4_5; cation-transporting P-type ATPase 13A3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009233 True 7509 mRNA 0.43 33 29930106 29955770

Neighbor

gene id symbol gene type direction distance location
AMCG00009234 NA coding downstream 2648 29908609 ~ 29927458 (-)
AMCG00009232 NA coding downstream 224303 29705333 ~ 29705803 (-)
AMCG00009228 NA coding downstream 288194 29636991 ~ 29641912 (-)
AMCG00009230 NA coding downstream 342252 29573069 ~ 29587854 (-)
AMCG00009217 NA coding downstream 732963 29187536 ~ 29197143 (-)
AMCG00009236 lsg1,LOC107573872,LOC107715771 coding upstream 35806 29991576 ~ 29998483 (-)
AMCG00009242 xxylt1,LOC106573863,LOC107718247 coding upstream 174018 30129788 ~ 30138314 (-)
AMCG00009243 xxylt1,LOC107715806,LOC106573863,LOC107718247 coding upstream 206650 30162420 ~ 30171530 (-)
AMCG00009244 NA coding upstream 225311 30181081 ~ 30185651 (-)
AMCG00009240 NA coding upstream 281138 30236908 ~ 30244496 (-)
G55551 NA non-coding downstream 167941 29759527 ~ 29762165 (-)
G55488 NA non-coding downstream 471279 29458615 ~ 29458827 (-)
G55404 NA non-coding downstream 872865 29055713 ~ 29057241 (-)
G55359 NA non-coding downstream 1036223 28843473 ~ 28893883 (-)
G55333 NA non-coding downstream 1174473 28755298 ~ 28755633 (-)
G55610 NA non-coding upstream 19859 29975629 ~ 29976269 (-)
G55648 NA non-coding upstream 280389 30236159 ~ 30236395 (-)
G55703 NA non-coding upstream 525009 30480779 ~ 30483373 (-)
G55722 NA non-coding upstream 535468 30491238 ~ 30491980 (-)
G55760 NA non-coding upstream 697142 30652912 ~ 30655021 (-)
AMCG00009229 ccd50,LOC106613514 other downstream 225177 29660960 ~ 29704929 (-)
AMCG00009215 gpr17 other downstream 867076 29057941 ~ 29063030 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other downstream 1540010 28385083 ~ 28390096 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 2311934 27613598 ~ 27618172 (-)
AMCG00009151 NA other downstream 2594375 27314317 ~ 27335731 (-)
AMCG00009235 NA other upstream 22167 29977937 ~ 29990810 (-)
AMCG00009241 NA other upstream 294101 30249871 ~ 30256499 (-)
AMCG00009265 NA other upstream 643704 30599474 ~ 30657612 (-)
G55878 NA other upstream 978794 30934564 ~ 30937251 (-)
G55881 NA other upstream 988597 30944367 ~ 30947211 (-)

Expression


Co-expression Network