AMCG00009235


Basic Information

Item Value
gene id AMCG00009235
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29977937 ~ 29990810 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009235
gaAGTGGTTAAATTGAAAGCTAGACATGAAAGGCTGGTGTTTTTGAGATGCAGAAAGAAGGACAGAGATTCTGGCAAAGCAGCCTTCTGTGCCTTCTGCTGCTTCCTTGGAAACACCATCAGTGCACTTGGGGCATCCTTATCAAACCAGCTCTCCATTCAGATATACATGGGAGCCTATATGGCTGCTCTGGatgttacacattttgttttaattatcttcCCTGTCTGTCAATGGATCATGCAGACAAGAAGATCTGGCAGAAGGAAtaagatgaggaagaggaggaggcagagtttTTTTGCTGTGTCTGGACCTCTGGCAGTGGGGGCAGGGTACTACATCTGGCAGACTCGCCACCTGCAATATGAGGATAAGGTTTACGTAGGACGAAATCTGCTTGGCATATTTTTGCAGGATAACACTGAGATCCTAGGGTTTGCTTTGGGACTGGTGTCTGTAATCATCTGCTGGACATCCAAGTTGCCTCATTTCTGCATGGCATACAGGGGACAGGTGAGCTCTACAGCACTGGTCTACCCTCGAGTCGTCTGTATCTTGGCCAGTGTCTGCTACGCGTTAGCCATTGTGTTTCCGGACAGACGCCCGATGGCTGTCCTGAAAGCGTCACCTTGGCTACTGACGTGTCTGGGATCTGTGGCCTTGGACAGTGTTGTATCCTTCATAATACTCCTGATATCCTGCTGTCAAAAGCCTGGCATGAACCAGCTAGCCCTGGAGAGCATTAACTCTGATACACAATCCCTCCTAGGATGCCCAGCAAAACAACACTCTCGCACTGTTGAACCACGCAAGAAAAAAACGGTTAATTTTAAAGGCAAAAACATCTCACAAGAGAGGCCAACCGTGGGCAGTCTTCCAGCAGAGCGTTCCAGCAATGCTGACCCCCCGGCCCATGGCCCTGTGATGGTGATCCATGCTGCCCACCCCTGCTCGTCAGACGGCTCCACTGACTCCATGTCAGGCAGCTCCGAGCTCGAGtGGGACTTTGAAGATACAAACAGGCAGTGGCGCAAAGCCAGTAAAGCGCAGAAAGGCACTGAGTCTTTCCCTCTTCAGGACTGGACAACTGGGCCCATTTCCAAGCCTGCCAGCCAACCAGAATCTGATTTCTGGTTCTATGATAGTGATATCACAATGACTGAGGAGCGAGTCTCTGCCATTTTGGATGACTATGAGAAAGAGATTCAGAAACCGAAGAAATGA
>TU69515
CTTGACCTACTATCTGCTGGAGCTGTAggcttgtattttctttgttcgTGCTGAAGCTCAGAAGTGTACAGACACTGAAAACAGAGCAAAGCAAAACTGAATACAGGGTCCTatctctttattttatatttcaggaAGTGGTTAAATTGAAAGCTAGACATGAAAGGTAAGACTCCAATGAAGAATAGTGAGACAAGCTATTGTAAATACACTATATAAcacttcaaaaaagaaaatgtaaggtATTGACCAGCACTGCAATTTTATTAGCAATGCATCGCTAAATgcaacaaagaaattaaatgatcctaaaattggaagctgtaggcattcagggtaatgtaagtagatgaattatgaactggctgatgtataggaaacagagggtgtcgattatatgagttgcttctaactggagtgaggttgttagtggagttccacagggatcagtattagggcctttgctttttctaatctatattaatgatctggactctgggagagttagcaaacttgtcaaattggcagatgatactaaagtaggtggctcagcagatacaatctcagcagcacaggctattcaaagggacttagataatattgagttgtgggccgacacctggcagatgaaattcaatgtggacaagtgcaaggtaatacatgcaggtaacaaaaatgtccactataattacactatgggaggaatagaactggaagaagtaacgcatgagaaagtccacgtagactcctagatctttctccaaccaaacaatgtggggaagcaataaaaaaggcaaacataatgttatggtatattgtcaaaagtgtagaatttaaaacaaggtcaGTAATGTTCAGaaaatgcactagttagagctcatctggatactgtgtacagttctgggctccaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009235 True 1227 mRNA 0.49 9 29977937 29990676
TU69515 False 912 lncRNA 0.38 1 29989899 29990810

Neighbor

gene id symbol gene type direction distance location
AMCG00009233 atp13a3,LOC106613657 coding downstream 22167 29930106 ~ 29955770 (-)
AMCG00009234 NA coding downstream 50479 29908609 ~ 29927458 (-)
AMCG00009232 NA coding downstream 272134 29705333 ~ 29705803 (-)
AMCG00009228 NA coding downstream 336025 29636991 ~ 29641912 (-)
AMCG00009230 NA coding downstream 390083 29573069 ~ 29587854 (-)
AMCG00009236 lsg1,LOC107573872,LOC107715771 coding upstream 766 29991576 ~ 29998483 (-)
AMCG00009242 xxylt1,LOC106573863,LOC107718247 coding upstream 138978 30129788 ~ 30138314 (-)
AMCG00009243 xxylt1,LOC107715806,LOC106573863,LOC107718247 coding upstream 171610 30162420 ~ 30171530 (-)
AMCG00009244 NA coding upstream 190271 30181081 ~ 30185651 (-)
AMCG00009240 NA coding upstream 246098 30236908 ~ 30244496 (-)
G55610 NA non-coding downstream 1668 29975629 ~ 29976269 (-)
G55551 NA non-coding downstream 215772 29759527 ~ 29762165 (-)
G55488 NA non-coding downstream 519110 29458615 ~ 29458827 (-)
G55404 NA non-coding downstream 920696 29055713 ~ 29057241 (-)
G55359 NA non-coding downstream 1084054 28843473 ~ 28893883 (-)
G55648 NA non-coding upstream 245349 30236159 ~ 30236395 (-)
G55703 NA non-coding upstream 489969 30480779 ~ 30483373 (-)
G55722 NA non-coding upstream 500428 30491238 ~ 30491980 (-)
G55760 NA non-coding upstream 662102 30652912 ~ 30655021 (-)
G55861 NA non-coding upstream 818766 30809576 ~ 30816091 (-)
AMCG00009229 ccd50,LOC106613514 other downstream 273008 29660960 ~ 29704929 (-)
AMCG00009215 gpr17 other downstream 914907 29057941 ~ 29063030 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other downstream 1587841 28385083 ~ 28390096 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 2359765 27613598 ~ 27618172 (-)
AMCG00009151 NA other downstream 2642206 27314317 ~ 27335731 (-)
AMCG00009241 NA other upstream 259061 30249871 ~ 30256499 (-)
AMCG00009265 NA other upstream 608664 30599474 ~ 30657612 (-)
G55878 NA other upstream 943754 30934564 ~ 30937251 (-)
G55881 NA other upstream 953557 30944367 ~ 30947211 (-)
AMCG00009269 NA other upstream 982143 30972953 ~ 30985995 (-)

Expression


Co-expression Network