AMCG00009236 (lsg1,LOC107573872,LOC107715771)


Basic Information

Item Value
gene id AMCG00009236
gene name lsg1,LOC107573872,LOC107715771
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29991576 ~ 29998483 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009236
CAGTCCTCACATGGTGTGCTGAGGAGCCAGTGCAGGGGCTGTATGTCTTGTCCATAACTCGTTTGAAATCAACAGGGCTTTGAAATATCTCGTTTGATGTGAAATAGGAAGATGGGAAAGAAGAAAAGTGGAGGCGGTGGCGCTGGGTTAGGCAGAGCCTTAATGAAAGACAGACAACTGGCTGGTCGAGGCAACAGAGGAGATTCCTGGCTCCACACCAGTGAACTGAATGATGGGTATGACTGGGGTCGACTCAACCTGCAGTCCGTCACAGAGCAGACTTCCCTGGATGAGTTCCTGGCCACCGCAGAGCTAGCTGGGACCGAGTTCGTGGCTGAGAAGCTCAATATCAAGTTTGTTCCTGCTGAGGCCAGAACAGGCTTGCTGACCACAGAAGAGAGCAAAAGGATTAAGAAACTTCATGAAGAGCACAAGCAACCGTACTGGGATGAAGGCACGAGTGCAGAGGCTCTGCAGCTGGCGGAGAGAGACAGCTTTCTGGAGTGGAGACGAGAGCTAGCGCAGCTTGAAGAGGAGCAGAAATTGATTCTCACACCTTTCGAGCGGAATCTTGACTTCTGGCGTCAGCTGTGGAGAGTCATCGAGCGGAGTGATATTGTAGTTCAGATTGTTGATGGACGAAACCCCTTGCTGTTCCGATGCCTTGACCTAGAGAAGTATGTGAAGGAGGTTTCCAAGGAGAAGGAGAACATGGTGCTGGTTAACAAGGCAGACCTGCTGACTAGGCCGCAGCGCAGGGCCTGGGCACGGCACTTCGAGAGAGAGGGCATCCGGGCTGTGTTCTGGTCCGCTCTGGCAGAAGCCAACAGGCTAGAGGCAGAAGAAAAGGGAGAGGAGCCTGCTGCTGTTGAGGAGGAGCACAGTGATGGCGAGGGAGACTGGATGGAGGAAGAAATGATTAGTAATGAAGTGGAGGTCGAGGAGGGGGAGGATAGGTTTGAAGACTGTGTGGAGGAGGGAGCCTGGCAGACCTGCTCTGAAGACTCAGACGACTCCGAGCAGGACGGGGCGGCCGCGTCCTCCTGCAGAAAGGCCATCCACAACTCCAGCCGCCTGCTGTCCAAAGATGAACTGCTGGAGATCTTCAAATTGGCACACACAGGGACCTGCATCAAAGAGGGGCAGATCACCGTGGGCTTGGTGGGATATCCTAATGTTGGGAAGAGTTCAACAATCAACACTATTCTACGAAATAAGaaagtttcagtttcagcaaCTCCTGGACATACAAAGCATTTCCAGACTCTGTTTGTGGAGCCCggcttgtgtctgtgtgactgtcCTGGTCTGGTCATGCCCTCTTTTGTGTCCACCAAAGCAGAGATGATCTGCTCTGGGATCCTGCCTATTGACCAAATGAGAGATCATCATATTCCCCGCCATGTACTTGAAGCCACCTACGGGATCAACATCATCCGGCCTCGTGAGGATGAGGACCCCGACCGGCCGCCCACGGCTGAGGAGCTGCTCGCGGCTTACGGCTATATGAGAGGATTTATGACAGCCCACGGACAGCCGGATCAGCCAAGATCAGCGCGCTACATTCTTAAGGATTACGTCAGTgGAAAGCTTTTGTACTGCCATCCTCCTCCCCACATAAATGCCAGGGACTTTCAGCCTCAACACAAAAGCTTTGAAAAGCAGGAAGCAGATAAGGGTCAGGGCTCATCAAGGACAGGAAACAGGCAGAAAATCAGGAGGATTGAGAACGTGGTGGATAAAAATTTCTTCCACCAGGAGAATGTGCGTGCACTGACCAAAGGAGTTCAGTCTGTAATGGGTTACAAATTAGGCAGCCTCCCACCTGCACCGGGAACCACAGCAACAGCAGAAGAGACCGTAGGGAAACCCTGGAAGAAACACGGCAAcagaaacaagaaagaaaaggttCGCAGGCTCACCAAACACCTGGATGCCTAACTTTGAACTGTACCTGGTGCTGGGCTACTTAACTGTTGCTGGCTAGACAGTTAAACTTAAAGATCTCTAAAAGCAATATCTTTCATTGGGAATTTAAAATCAGGAACACTTCAATTCAATTTGAAGCATTTTATATTAAGATTTGTTAAGCTATTGAAGGTTAACTGGCTACCTATACAAAATAGTGTTAATCCATACcgttgttataaaaaaaatgtaccttaGGGTATTAGttttctaatttttattttattgtttatcaaTATGGCTTACATCAAAGACCATTTACTCTttataactgaaaaaaaacaagcccatctataagaaaatatttcagaGAATCTTATACTTacgtatgtttttaaaaaatatatttatatgtttaaatacatatataaatatgtgaaaatgtatagtTGACAAAATGGTTTTGGAAAGATTTCTAAGATGCTGTCACTTTCAAAGGACGGTAACAGTTGAAATCTTGGCACACGTGTCCCACGCCTTCGAGACGACCACAGTGCAGTCCTGTGGAGGCCAATAAATCACAATTATGAGATTAAATTGGCGGCTCAGAGGtctaatactgtttttataagGAAAGGTGGTGCGCATATGGAAATAGATTAAGCCTCTGTGAAGGAGCTTATCAAGATGAGGTGGGAGTTCAGGAAAGCGTGCCTCTAAGATGCAGCCCTGAGGATGTCCTGCATGAGGCTGCGGGTCCAGACAGGCAGGGCCCCGGACTCCTGGCTCTGTGATTGCAGTGGTCAGCACTCCGCACACCAGGGGCCGGCCAGCTGAAGTTTCCCATTagcaaatgaatgaatgaatgaatgaactttAAAGCCCAAACTAACTTCATTTGTATGTACTGTTAACTTATACATTAGTAGGGAAAGGTCTTTTTTTTTNNNNNNNNNNTTTTCTTTTGCTGAAAttctaaatcaattaaaataagttcTAA

Function

symbol description
lsg1 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in ribosomal subunit export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in Cajal body and endoplasmic reticulum. Predicted to be active in cytosol. Is expressed in eye; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human LSG1 (large 60S subunit nuclear export GTPase 1).

NR:

description
PREDICTED: large subunit GTPase 1 homolog

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14539 LSG1; large subunit GTPase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009236 True 2908 mRNA 0.47 14 29991576 29998483

Neighbor

gene id symbol gene type direction distance location
AMCG00009233 atp13a3,LOC106613657 coding downstream 35806 29930106 ~ 29955770 (-)
AMCG00009234 NA coding downstream 64118 29908609 ~ 29927458 (-)
AMCG00009232 NA coding downstream 285773 29705333 ~ 29705803 (-)
AMCG00009228 NA coding downstream 349664 29636991 ~ 29641912 (-)
AMCG00009230 NA coding downstream 403722 29573069 ~ 29587854 (-)
AMCG00009242 xxylt1,LOC106573863,LOC107718247 coding upstream 131305 30129788 ~ 30138314 (-)
AMCG00009243 xxylt1,LOC107715806,LOC106573863,LOC107718247 coding upstream 163937 30162420 ~ 30171530 (-)
AMCG00009244 NA coding upstream 182598 30181081 ~ 30185651 (-)
AMCG00009240 NA coding upstream 238425 30236908 ~ 30244496 (-)
AMCG00009255 psmd1 coding upstream 495177 30493660 ~ 30515776 (-)
G55610 NA non-coding downstream 15307 29975629 ~ 29976269 (-)
G55551 NA non-coding downstream 229411 29759527 ~ 29762165 (-)
G55488 NA non-coding downstream 532749 29458615 ~ 29458827 (-)
G55404 NA non-coding downstream 934335 29055713 ~ 29057241 (-)
G55359 NA non-coding downstream 1097693 28843473 ~ 28893883 (-)
G55648 NA non-coding upstream 237676 30236159 ~ 30236395 (-)
G55703 NA non-coding upstream 482296 30480779 ~ 30483373 (-)
G55722 NA non-coding upstream 492755 30491238 ~ 30491980 (-)
G55760 NA non-coding upstream 654429 30652912 ~ 30655021 (-)
G55861 NA non-coding upstream 811093 30809576 ~ 30816091 (-)
AMCG00009235 NA other downstream 766 29977937 ~ 29990810 (-)
AMCG00009229 ccd50,LOC106613514 other downstream 286647 29660960 ~ 29704929 (-)
AMCG00009215 gpr17 other downstream 928546 29057941 ~ 29063030 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other downstream 1601480 28385083 ~ 28390096 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 2373404 27613598 ~ 27618172 (-)
AMCG00009241 NA other upstream 251388 30249871 ~ 30256499 (-)
AMCG00009265 NA other upstream 600991 30599474 ~ 30657612 (-)
G55878 NA other upstream 936081 30934564 ~ 30937251 (-)
G55881 NA other upstream 945884 30944367 ~ 30947211 (-)
AMCG00009269 NA other upstream 974470 30972953 ~ 30985995 (-)

Expression


Co-expression Network