AMCG00009240


Basic Information

Item Value
gene id AMCG00009240
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30236908 ~ 30244496 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009240
CGTGTGGGCGGGCACAGCGAAACGCGCAGAACAGGAAAGTAATCTGCGCGTCTTCCTGCGTGCTGCCTTTCTTCTTCCAGCTCTCCACCAGAAAGCAAGGCAGGGCCACGTGTGGAGCAGTAATAaaacagatacatattttttgtattctcgTCCGTTACTGATTTTTTTCGAGCAGTCAACATCAACATCTGCAATCATGGTTAAACTGGCAAAGgcagCGAAAAAGCAGAATAACCCCAAGAAAAAGGCGCCCCCACCTCCCAAGGACGTGGAATCCAGCGAGGAGGAGGAATccagcgaggaggaggaggagagcgaaGAGGAGTTACCCACCCCAAAACCTGTGGGAAAGAAGGGAGCCACACCAGCTAAAGCAGCAAAAGCATCCAAAAACGGAAAAGTTGTaaagaaacaagaaagtgaaGAGGAGGACTCTGAGGAAGAAGCTGAGGTTCCACCACCTAAGAAAGGCAAGGCCACTCCTGCCAAGGGAAAAGCTGCACCCCCGAAAAAAGCCACACCAGCAAAGAAAGAGGAgtcagaggaggaggatgaggaagatGACGATGAGGAAGATGATGAGGAATCAGAGGAAGAAGCCCCTCCCCCAAAAAAGGCTACTCCAGCGAAGGCCTCTGTGAAAGTGACCCCCGCAAAAAAGGCAGCCCCAGCCAAGAAGGAAGAGtcggatgaggaggaggaggatgacgaAGATGAAGAAGaCTCTGAAGAAGAAAAGATGGACACCACTCCGGCACCTGCTGCCAAGGGAAAGAAAGCAGGACTGGTGAAGGCCAAGGAGGAGTCtgaagaagaggaggatgatgatgaggacgatgatgaggatgatgaagaggaggaggatggcaGTGACGAAGATGaatCTTCTGAGACTGCTGGGAAGAGGAAGAAGCCTGAACCTAAAAAGAAAGAGGTTCCTGCAGCCAAGAAGCCAAAGTCTGAGAAAGAAGGCTTTTCCCTTTTTGTCGGCAATTTGAACAGTGAGAAGAACTTTGAAGAACTCAAAGAAGCTCTggacactttcttctccaagaAAAACCTTGAAGTTCAGGACATTAGAGTTGGATCTTCCAAgaaattTGGCTATGTAGATTTTGCCAGTGAAGAAGACCTGCAAAAAGCTCTGGAACTGAATGGAAAGAAGCTACTTGGACAAGAAGTGAGACTAGACAAAGCAAAGAGCAAGGAGAATGCCCAGGAAAGCAAGAAAGAGAGGGATGTTCGCACACTGTTTGTGAAGAACCTCCCATATTCTGTGACCATCGACGAGCTGAAAGAAGTGTTCGATCAGGCAGTCGATGTCAGAATACCAGCCGGCAGGGATGGCACCAGCAGAGGAATTGCCTACCTTGAGTTCAAGACTGAAGCCATTGCAGAAAAGGTCCTTGAAGAGAAGCAGGGAGTGGATGTCCAGGGCCGTTCAGTTATCCTGGATTACACAGGAGACAAGAGCCAGAAAGGGGCCAGAGCTCCTCCCGCCTCAAATGGGAGCAAGACTCTTGTAGTGAATAACCTGGCTTACAGTGCAACAGAAGATGCTCTGCAAAGCGCATTTGAGAAAGCAATTTCTGTCAGAATACCACAGAACAACGGCAGACCAAAAGGATTTGCTTTTGTAGAGTTTGAGACTGCAGAGGATGCTAAGGATGCCCTTGAAAGCTTGAACAACACAGAAATTGAAGGCAGGTCAATCAGACTAGAATACAGCCAGTCCGGTGGACAGAAATCGGATGGTGGCAGAGGAAATTCGGGTCCAACCAAGACGCTGTTTGTCAGAGGTCTTTCCGAGGACACCACAGACCAGACTCTGAGAGACTCGTTTGAAGGTGCCGTTGCAGCCAGAATAGTCACAGACAAGGACACTGGGTCCTCTAAAGGATTCGGTTTTGTGGATTTCGACTCCGAGCAAGACTGCAAGGCTGCCAAAGAAGCCATGGAGGACTGTGAGATTGATGGCAACAAGGTGACTCTGGACTACGCCAAGCCCAAGGGTGATAGGCAGAGTGGCGGCAGGGGTGGCTTCGGAGGGTTTGGAGGCAGAGGTGGTGGCGGCAGAGGAGGACGCGGTGGTTTCGGCAGAGGTGGCGGTGGCTTCAGGGGAGGACGTGGTGGCAACCGTGGAGGCTTCGGAGGTAGAGGAGGTGGTGGCTTTGGAGGAAAACCCCAGGGAAAGAAGATCAAGTTTGATGATTAAATCTCCATaattttttcaaatggactctgtttttcatcttaattttcTCTATGCGCTGACAGAGCCTTTGGACATTCCAGAACGCGtcagttataaaatatatatatataaatgtgacgGGCACCCCAGCCTCCCCTCAACCTGTAGCCGAAGAGAACTTCGTGTGAGATGTCCCGAGTGCCCATCTTCATCTCTGTTAATTTTTCAAAGGGGTAAAATGGAATGTGACGACAACCCACACCCGCAACGTGAAATGACCTGTTGGTTTAGGTACATATTGTACATGCGACGATttgtataatttcattttacCTTTTGTAAAAAGTGGtttccttatgtattttttttttatttcctttttttttttattagttcgCTGTAAATGCAAAAGTTTTACCATAAGAAATGTGCTAAGCATATTGTAACGGACGAAAGATTAAATGGACCCAAATGACTATTGGGTGTTTAGAAACGGTTTGCCTTTGTGTGATATTGTATGTTGATTGCGCTCAGCAGGGGTGTTTAGAGGCTCACTGTTACCAAAATCGAACCACCCTTGGACTGAAGTAAGTTGCTTTGTGGAAGCTATGGAAAAGTTGTAGCGTAAACCTTTTATCTTGTGCAGActtgaacaaaagaaaaagggaaatattttcCACTAATGTTGGCAGTAGAACTTAATGTGTatgacagtttaaataaaatatgttgcaGGTAGTTTCCAATGATGGCCTTTCTCCTG

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K11294 NCL, NSR1; nucleolin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009240 True 2960 mRNA 0.47 16 30236908 30244496

Neighbor

gene id symbol gene type direction distance location
AMCG00009244 NA coding downstream 51257 30181081 ~ 30185651 (-)
AMCG00009243 xxylt1,LOC107715806,LOC106573863,LOC107718247 coding downstream 65378 30162420 ~ 30171530 (-)
AMCG00009242 xxylt1,LOC106573863,LOC107718247 coding downstream 98594 30129788 ~ 30138314 (-)
AMCG00009236 lsg1,LOC107573872,LOC107715771 coding downstream 238425 29991576 ~ 29998483 (-)
AMCG00009233 atp13a3,LOC106613657 coding downstream 281138 29930106 ~ 29955770 (-)
AMCG00009255 psmd1 coding upstream 249164 30493660 ~ 30515776 (-)
AMCG00009254 psmd1 coding upstream 292354 30536850 ~ 30542295 (-)
AMCG00009253 NA coding upstream 299657 30544153 ~ 30547821 (-)
AMCG00009262 eif2b5 coding upstream 317252 30561748 ~ 30567694 (-)
AMCG00009268 NA coding upstream 407151 30651647 ~ 30652128 (-)
G55648 NA non-coding downstream 513 30236159 ~ 30236395 (-)
G55610 NA non-coding downstream 260639 29975629 ~ 29976269 (-)
G55551 NA non-coding downstream 474743 29759527 ~ 29762165 (-)
G55488 NA non-coding downstream 778081 29458615 ~ 29458827 (-)
G55404 NA non-coding downstream 1179667 29055713 ~ 29057241 (-)
G55703 NA non-coding upstream 236283 30480779 ~ 30483373 (-)
G55722 NA non-coding upstream 246742 30491238 ~ 30491980 (-)
G55760 NA non-coding upstream 408416 30652912 ~ 30655021 (-)
G55861 NA non-coding upstream 565080 30809576 ~ 30816091 (-)
G55975 NA non-coding upstream 1670672 31915168 ~ 31915373 (-)
AMCG00009235 NA other downstream 246098 29977937 ~ 29990810 (-)
AMCG00009229 ccd50,LOC106613514 other downstream 531979 29660960 ~ 29704929 (-)
AMCG00009215 gpr17 other downstream 1173878 29057941 ~ 29063030 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other downstream 1846812 28385083 ~ 28390096 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 2618736 27613598 ~ 27618172 (-)
AMCG00009241 NA other upstream 5375 30249871 ~ 30256499 (-)
AMCG00009265 NA other upstream 354978 30599474 ~ 30657612 (-)
G55878 NA other upstream 690068 30934564 ~ 30937251 (-)
G55881 NA other upstream 699871 30944367 ~ 30947211 (-)
AMCG00009269 NA other upstream 728457 30972953 ~ 30985995 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location