AMCG00009250


Basic Information

Item Value
gene id AMCG00009250
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30265253 ~ 30298128 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009250
ATGCAACATCATAGGCAGGGCAGAGGGATTAACCAGTCTGGAGAGGGCAGGCGAGTGCAGAATGCCCCCCAGAAAGATGCCTATTCCAGGCTCCTTAATCAGCATCACAGCAGCAAGTTTCGCTCTTTCCTGAACCAGtttgcacagcaacagcagctggAAATGGATGAGAACGGGGGAAATCTGGCTGGTGATACCAGTCTGGAGAGGCAGGATACTCCTCCAAGGAAGAGGGAAGATGACATGAAAGGAGGCCTCTGCACGAATGGATATTCACCTTCCGCCACTAAGGGAGCTGAAGCGGAGAGCTGTCTGTCCTTATACATGGAGAAGCTGAGCGAGCGCGGAGACTCTGTGGAGACCTTGAAGGTCGCGCAAGGGATGGCAGCTCGGCAGCGCCATGGCAAAAGGAGGGACACCAACACCAGCCAGGATGGAGACGTTGAGTCTGGTGGTGAGGGGACCTTGAGACAGGTGAACTCCAACCAGCAGAAGCATCATCACAGCGATATtctgtcttcagtgccctgcACGGCAGTTCTTGTGGGAGGCTTGGACAAGGATATGCTCCTGAGCTCAAGACAAGAGTTTTCTGCTGCAGTGCACAGCAGTAGCCCTGGCTCTGGGCTTGAACAGCAGCAGgacaagaaaaagaaatcaaagaagaaaaatgtgacCAAAGGCAATGCAGGTGGCAACCAAGAGGGATCGGGATTCAAAGATTGCGATGGGACAACTGTCAATAAAGGACACATTGATATGGGAACTATTGGGCAGTCCCCAGGCACAATGTGTAGTCCAAATATGACTCCCTCTGATAAAGGTAAAAATAAGCACAAACCAGGCAGAGGCAAGAAGAAACAAGTGTTTGAAACCTACATGGATGCACAGGATGTTTCTGCAGGGTTAAAGAGACAAGAACTCATTCAGGGCTCCTTAAGAATCAACCCTAAAAAGTACCATGAAGCCTTCATTCCTTCTCCTGAAGGGACACGGGACATATTTATCGATGGGATTGTGTCTCGCAACAGAGCTCTGAATGGGGATGTGGTGGTGGTGAAAATCCTCCCGCGGGACCAGTGGAAGGTGATAAAGCCAGACAATGATGTGGAGGAGGTGAGCGAGCCCGAAGTTCCAGATGATCCCACTGGCCAGCGTGAGTGCAGCCCTGATGTCATCGTGGAGGCGCAGTTTGAGGCTGAGCGAGATGGCCAGCAATCGGCCTCTGATTTGCTCATCAACAGGATGGAAAGTGTGAACCTAAGTGTTGCAGGCACCACTTCTCTGAAAAACAGTGAAACCCCAGGTTCAAAGCAAGATAAGATCGGCAGTTTAGCTGACCCTCAAACTCTTGCTGATAAGTTTCTTCAAAGGACTGGAAAGGTGGTGTACATTGTGGAAAAGAAGCATTCTCGTGCAGTGACAGGCTTCATTAAGCACTTGCCAGAGAAAGACTTTGCCATGTTCTCCCCTGTGGACCACAGGGTCCCACGGGTGAATGTGCCACTGGCCGACTGCCCTCAAGACTTTACGACACGCCCTGCCGACTTCGCCAACATCCTCTTCATCTGCCGGATTACTAACTGGCATGACGACAGCAACTTTGCTGAA

Function

GO:

id name namespace
GO:0044427 obsolete chromosomal part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009250 True 1611 mRNA 0.51 7 30265253 30298128

Neighbor

gene id symbol gene type direction distance location
AMCG00009239 NA coding upstream 41776 30218869 ~ 30223477 (+)
AMCG00009238 NA coding upstream 56524 30186900 ~ 30208729 (+)
AMCG00009237 fam43a,LOC106573864,LOC102785697 coding upstream 255411 30008802 ~ 30009842 (+)
AMCG00009231 her6,hes1,LOC107711114,LOC107680502,LOC107582845,LOC107722674,LOC107685314 coding upstream 404884 29858925 ~ 29860369 (+)
AMCG00009226 opa1,LOC107585173,LOC107722677,LOC107711112,LOC107582739 coding upstream 522648 29717027 ~ 29742605 (+)
AMCG00009246 dis3l2 coding downstream 14666 30312794 ~ 30327528 (+)
AMCG00009248 dis3l2 coding downstream 64924 30363052 ~ 30373668 (+)
AMCG00009249 NA coding downstream 90825 30388953 ~ 30404240 (+)
AMCG00009245 NA coding downstream 109742 30407870 ~ 30421424 (+)
AMCG00009247 NA coding downstream 148548 30446676 ~ 30483381 (+)
G55649 NA non-coding upstream 22522 30236924 ~ 30242731 (+)
G55620 NA non-coding upstream 43126 30142212 ~ 30222127 (+)
G55597 NA non-coding upstream 266767 29998229 ~ 29998486 (+)
G55596 NA non-coding upstream 269383 29995563 ~ 29995870 (+)
G55595 lsg1 non-coding upstream 270612 29993622 ~ 29994641 (+)
G55707 NA non-coding downstream 197415 30495543 ~ 30497604 (+)
G55745 NA non-coding downstream 301346 30599474 ~ 30602032 (+)
G55800 NA non-coding downstream 649238 30947366 ~ 30950209 (+)
G55807 NA non-coding downstream 857390 31155518 ~ 31163151 (+)
G55926 NA non-coding downstream 1244493 31542621 ~ 31547232 (+)
G55591 NA other upstream 269815 29995126 ~ 29995438 (+)
G55573 NA other upstream 353689 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 1090522 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 1157026 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 1253485 28928892 ~ 29011768 (+)
G56060 NA other downstream 1863632 32161760 ~ 32165365 (+)
G56368 NA other downstream 3702668 34000796 ~ 34031445 (+)
G56369 NA other downstream 3717542 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 4065291 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 5090786 35388914 ~ 35389327 (+)

Expression


Co-expression Network