AMCG00009259 (LOC103373082)


Basic Information

Item Value
gene id AMCG00009259
gene name LOC103373082
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30928174 ~ 30935918 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009259
ATGACTGCCACTACTATGGCACACAACGTGGAGAAAGTTTCTAGTGCTAAGGAAGAGAGAAAGCTGCGAAAGCCActtattgaaagaaaaagacgAGAAAGAATCAACAATTGCTTGGATCAGCTGAAAGAAGCAGTAGTTGGCGCCTTTCGGTTGGATcaatcaAAACTTGAAAAGGCTGACATTCTTGAAATGACAGTTAAACACCTGCAAAACATTCAAAGTAGTAAATTTGCCGCCGATTCGTCAATGGGACTGGAAGCTCAGCAAAAGTACAGTACGGGATACATCCAATGTATGCATGAAGTTCACAACCTGCTCTTATCTTGTGAGTGGATGGACAAGACCCTGGGCTCTCGCCTGCTCAACCACCTTCTGAAATCTTTGCCGCGGTCAATTGAGGAGACCTCTTCCAAATCAGCTCCAAGACCCCCCAGTCCAGTCACTCCTGCTCCTGCACAGCTGAAAGAGTCCAGCCTGGAGCCCTTCAGCAGTATTGCATTTAAACCTGCATCAGACTTAGAGATGGCTACCTACACCCAGCAAAGGCCCCTTAGCCAACAGGAGAACCGCCTCTTTGGGCAGCAGTGCCTGGGGTCACTAGACATGTGGAGGCCATGGTGTTTCCCACTTGATGCTGAAGAATATAGCCCTGGATCGTATCCCCTTAAAGCAGGGGGCAAATTCACCTCGGCCGGCAACGTGAACCACAAAACTGTTGTTCCTGCGCATTGTCGTGTCCGCACCGGCAGAGCCCGGCCGGCCCCGGCGCTAGACAAAGCGCTGCCCCGCCATTGGCTGGAACAGGGTGCGCTCCGGCGTCGGCTGGTGCGCGTAGCCAAACCTCCCATTCATATTACTGATTTCTGGGACTGCGTCCGCCTGCCAGCTGCCCCTCTCAAGGATCGTACCGTACTTGTGGATTACACCGTTTTCTCCTATTCTTGGGTTGGAACCAACATGGCCCCCTCATCTCGAGCCAGTAAAAATGGATCTAGCAGGGATGAGGAGGAATACTATGGGATTAAAGGAGACCGAAAGCTCCAGACGAAAATGGAGAATGCTGAAGTGTTAGAGATGACTGTGAAGCGAGTTGAAAATATCCTGCGGAACCGAGCCATGGAGGCTGACACTATAAACCGGGAGGCGAGCGAGAGGTTTGCAGCGGGGTACATCCAGTGCATGCACGAAGTCCACATGTTTGTGTCGAATTGCCCGGGGATTGATGCTACAGTGGCCGCGGAGTTATTGAACCACCTTTTGGAATCTATGCCTTTGAATGAGGACCATTTTCAGGATATGCTCGTGGATTTAATGTCGGACTCTTCCAGCAACAACAGCACTTGGCTTAACAGTGATGGGATGAGCCCCTCACTGGCTTCCCCCGGGGGGACGAGTTTGTCCGGGGCTTCTTCAGCCCTCTCTCCGGCCCCATCCACGACCTCAAGCGAGGACATCTGTTCTGATCTAGACGAGACTGACAACGAGCAGAGTCAGATTTCACCAGAAACGGTGGAAAACTCTGGGGTTCAGAATATGCCCACAACTACCTATTCAAAATCGATGTGGAGACCTTGGTAG

Function

NR:

description
PREDICTED: transcription cofactor HES-6-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009259 True 1581 mRNA 0.51 9 30928174 30935918

Neighbor

gene id symbol gene type direction distance location
AMCG00009260 NA coding upstream 51142 30865491 ~ 30877032 (+)
AMCG00009264 NA coding upstream 81686 30838893 ~ 30846488 (+)
AMCG00009256 NA coding upstream 153684 30642206 ~ 30774490 (+)
AMCG00009257 NA coding upstream 286033 30616894 ~ 30642141 (+)
AMCG00009252 NA coding upstream 369882 30552556 ~ 30558292 (+)
AMCG00009258 NA coding downstream 8453 30944371 ~ 30947285 (+)
AMCG00009273 NA coding downstream 195232 31131150 ~ 31136570 (+)
AMCG00009277 clstn2,LOC107561803,LOC107738117,LOC105912785,LOC107694660 coding downstream 419199 31355117 ~ 31370777 (+)
AMCG00009278 NA coding downstream 458961 31394879 ~ 31412124 (+)
AMCG00009276 NA coding downstream 483922 31419840 ~ 31424011 (+)
G55745 NA non-coding upstream 326142 30599474 ~ 30602032 (+)
G55707 NA non-coding upstream 430570 30495543 ~ 30497604 (+)
G55649 NA non-coding upstream 685443 30236924 ~ 30242731 (+)
G55620 NA non-coding upstream 706047 30142212 ~ 30222127 (+)
G55597 NA non-coding upstream 929688 29998229 ~ 29998486 (+)
G55800 NA non-coding downstream 11448 30947366 ~ 30950209 (+)
G55807 NA non-coding downstream 219600 31155518 ~ 31163151 (+)
G55926 NA non-coding downstream 606703 31542621 ~ 31547232 (+)
G55929 NA non-coding downstream 612613 31548531 ~ 31552162 (+)
G56021 NA non-coding downstream 1117869 32053787 ~ 32057482 (+)
G55591 NA other upstream 932736 29995126 ~ 29995438 (+)
G55573 NA other upstream 1016610 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 1753443 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 1819947 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 1916406 28928892 ~ 29011768 (+)
G56060 NA other downstream 1225842 32161760 ~ 32165365 (+)
G56368 NA other downstream 3064878 34000796 ~ 34031445 (+)
G56369 NA other downstream 3079752 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 3427501 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 4452996 35388914 ~ 35389327 (+)

Expression


Co-expression Network