AMCG00009260


Basic Information

Item Value
gene id AMCG00009260
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30865491 ~ 30877032 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009260
ctCCACCATGAGCAATTGTTCCTTTAAAGAAGTCAATGACTTTATGAGCTCAATATATTTAGTCATCTATATTCCTACATTTGTTGTGGGCCTTATCCTAAACTCCCTGGCACTGGTTGTCTTCTGTGTCATGCTGAAGAAATGGACAGAATCGACCATTTACATGACTAATCTTGCACTAATGGACCTCCTGCTTCTGCTACCTCTGCCCTTTAAAATGCATGCGTCAATGAATAAATGGTCCAGTGACAAAAAAACTGCATGCTCTTTCCTGGAGAGCCTTTACTTTGTGAGTATGTATGGGAGCATATTCACAATCATGTGCATTAGTGTTGACAGGTACATAGGAATCAAACACCCTTTCAAGGCCAAAGTGTTGAGATCACCAAAAAAGGCGCTGATTGTGTGCATTGTAATCTGGGTTGCTGTGTGGGCGGGAACTGCCCCCGTTTATGGCTTCCACTCTGAACAGGAGCCCGGTGCTGatgttttcagatgttttcatGGATTTTCAAAGGATTCCTGGAGCATCCCAGTGATCTTGAATCTGGAGATAATCGGGTTTCTCATCCCAATGCTGGTAATGGTTTTCTGCACTATACAGATCATCATAACCCTAAAAAAGTCTGAACAGAACAGGGAAAACAGCCAGGCTGGGATCAGAATCATATATGCCAACCTGTTTGTGTTCCTGGTATCTTTTACGCCAAGCCACCTGGggatttttttacagtttttggtTCGGAGAGACTTCATTGAAGACTGTTCTTCAAAACTCaatattagtttatttgttCAAGTAACAATGTGCCTGGCTAATGTCACCTGCTGTCTGGATGCTATTTGTTATTACTTCATTACAAAGGAAATTCGATCAACAAGTGGCTCTTTCAGGAGATCCCGGAGCCACAGGATTAATAGTACAACAACAGAAATGTACGCATATAGAAACAGCTGGAAACTGGGAGACGGACTGTGTTCTTTCCTGGAGAGTCTTCTGTATGTTAACATGTACGGCAGCATACTGATCATTGCATGCATTTCTGTGGACCGCTACATTGCTTTAAGACATCCCTTTTTCGCCAAAACTATTCGCTCACCGCGGAAAGCCACAGTTGCCTGCATTGCAATATGGATAATCATTTTTGGAGCCAGTGGGCCAGTTTACAAGTTACATGGCAAAAATACCActgattgttttaaaactttttcaaatgaaacctGGAATAAAGTCCACATCGTGGTTGGGATGGAGACTGTGTTCATCGCCAGTGCCCTCGTCCTCATCTTCTGTTCCATCCATGTGATCAAGATCTTAATTACAATGCAAAAGAGAAACACCGGAGACCAGCAGCTCCTGAATAACAAATCGATTAAAATCATCCTCACCAACCTCATATCATTCTTGGTCTGTTTCATACCTTATCACATTGCAGTACCtatgtattttatgaaaaagaaacaaaacatgaattctgACCCGTTAATTGATAGTTTGCGGAATTTTATTCACATCTCCATTTGTCTGACAAGCATTAACTGCTTATTTGATGGGATTTgctattattttatcattaaagaGATCACAATATCTGCTAGACAGACAGCAACGGAAACAACTGAGCTAACGGATGTTTTCAGGAAGACAAGCAAAAGGACCTGTACTAATCTAAGAACTCAACTCAGTAAGGACGACAACCAACAGTTAAGTTTAACT

Function

GO: NA

KEGG:

id description
K08413 GPR55; G protein-coupled receptor 55

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009260 True 1717 mRNA 0.41 2 30865491 30877032

Neighbor

gene id symbol gene type direction distance location
AMCG00009264 NA coding upstream 19003 30838893 ~ 30846488 (+)
AMCG00009256 NA coding upstream 91001 30642206 ~ 30774490 (+)
AMCG00009257 NA coding upstream 223350 30616894 ~ 30642141 (+)
AMCG00009252 NA coding upstream 307199 30552556 ~ 30558292 (+)
AMCG00009251 NA coding upstream 334999 30517226 ~ 30530492 (+)
AMCG00009259 LOC103373082 coding downstream 51142 30928174 ~ 30935918 (+)
AMCG00009258 NA coding downstream 67339 30944371 ~ 30947285 (+)
AMCG00009273 NA coding downstream 254118 31131150 ~ 31136570 (+)
AMCG00009277 clstn2,LOC107561803,LOC107738117,LOC105912785,LOC107694660 coding downstream 478085 31355117 ~ 31370777 (+)
AMCG00009278 NA coding downstream 517847 31394879 ~ 31412124 (+)
G55745 NA non-coding upstream 263459 30599474 ~ 30602032 (+)
G55707 NA non-coding upstream 367887 30495543 ~ 30497604 (+)
G55649 NA non-coding upstream 622760 30236924 ~ 30242731 (+)
G55620 NA non-coding upstream 643364 30142212 ~ 30222127 (+)
G55597 NA non-coding upstream 867005 29998229 ~ 29998486 (+)
G55800 NA non-coding downstream 70334 30947366 ~ 30950209 (+)
G55807 NA non-coding downstream 278486 31155518 ~ 31163151 (+)
G55926 NA non-coding downstream 665589 31542621 ~ 31547232 (+)
G55929 NA non-coding downstream 671499 31548531 ~ 31552162 (+)
G56021 NA non-coding downstream 1176755 32053787 ~ 32057482 (+)
G55591 NA other upstream 870053 29995126 ~ 29995438 (+)
G55573 NA other upstream 953927 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 1690760 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 1757264 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 1853723 28928892 ~ 29011768 (+)
G56060 NA other downstream 1284728 32161760 ~ 32165365 (+)
G56368 NA other downstream 3123764 34000796 ~ 34031445 (+)
G56369 NA other downstream 3138638 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 3486387 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 4511882 35388914 ~ 35389327 (+)

Expression


Co-expression Network