AMCG00009273


Basic Information

Item Value
gene id AMCG00009273
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31131150 ~ 31136570 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009273
CTCGCCTTCCCATAATTCACTTGCTAAGGTTAAGGGGCGGGGCTTGAGGTTGAACTCTGTGGAAACATGGCTGCCTTCAGCGTAGCAAGGTGTCTGTTCAAATATTCCTCCCAGCTATCAAATGTGGACAAGAAATCGCATATATTGCACAAATGTGCGAGAAGAATGCTGTGCAGTGCGTCGTCGGGAGGATCTTCAGATGGAAGGAAGCCACAGTTCTCAGATGAAGAAGTTCAAAATATTCTGACCAATATCACTGGTCTGGACCTGCAGAAGATATTCCGACCTATTAAACAGGAGCTAAAGCCACCAACATACAAACTCATGACAGATCAACAGCTGGAAGAGGAGCGCTTTATTGTTGTCCGGGAACCAGATGGGAAGTTACGCAAAGCTTCTTGGGTAGAACGGGATCGGATTTTGCAGATATACTTCCCTAAGGAGGGCAGGAGACTCACACCACCACCAGtctttaaagaagaaaacatgaagGTTGTATTTCTGCAAGACCGACATGAAGACATCCTTGACCTCTGCCTTGTCCAGTTTGAGCCAGATTCCTCTGAGTACATAAAAgTACATCAGCTAACATATGAGGATATTGACAAACAGGGAAAGTATGACCTTCTGCGCTCAACCAGACACTTCGCGGGAATGGTTTGGCACTTGGTCAACGTGAAAAGAATCGACGGCTTATTGATTGATATGATCCAGAGAGACCTGATACAAGATGCTGCCAGCCTGGTTCATTTGTATCATATGTTGTATCCACAATGTCCGTCAGCTATTGAGGCAAAGGAGCAGCAAGCCAGTGGAATTGAGCTGCTTAAGATTTTTGCCAAGAAAGAATCCCAGAAGACTGGTTACATTGAACTTGCTCTCGAAGCCTACCAGGAGACCACTCTCGAAAGCTCTGCATAATGATCGCTAGCGAGACATTTCTGACTTCAGCTCATCTCGCACGAGGAGGAGGCTTCTTACCTGACCTGGTCTCATGTACCGGTCTGATCACGTTGCTTTAGCGCAGCAGCCAgtgctgtactgcagtgtaattttcattctttatattaaagtatcattaaaaaaaacccaTGCTGATtactttcatttccttttcaaaataaaccattcaGAAAAGAAACATATGAACAAGAGATG

Function

GO: NA

KEGG:

id description
K17401 MRPS22; small subunit ribosomal protein S22

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009273 True 1158 mRNA 0.44 7 31131150 31136570

Neighbor

gene id symbol gene type direction distance location
AMCG00009258 NA coding upstream 183865 30944371 ~ 30947285 (+)
AMCG00009259 LOC103373082 coding upstream 195232 30928174 ~ 30935918 (+)
AMCG00009260 NA coding upstream 254118 30865491 ~ 30877032 (+)
AMCG00009264 NA coding upstream 284662 30838893 ~ 30846488 (+)
AMCG00009256 NA coding upstream 356660 30642206 ~ 30774490 (+)
AMCG00009277 clstn2,LOC107561803,LOC107738117,LOC105912785,LOC107694660 coding downstream 218547 31355117 ~ 31370777 (+)
AMCG00009278 NA coding downstream 258309 31394879 ~ 31412124 (+)
AMCG00009276 NA coding downstream 283270 31419840 ~ 31424011 (+)
AMCG00009281 NA coding downstream 456478 31593048 ~ 31604365 (+)
AMCG00009283 NA coding downstream 784117 31920687 ~ 31940691 (+)
G55800 NA non-coding upstream 180941 30947366 ~ 30950209 (+)
G55745 NA non-coding upstream 529118 30599474 ~ 30602032 (+)
G55707 NA non-coding upstream 633546 30495543 ~ 30497604 (+)
G55649 NA non-coding upstream 888419 30236924 ~ 30242731 (+)
G55620 NA non-coding upstream 909023 30142212 ~ 30222127 (+)
G55807 NA non-coding downstream 18948 31155518 ~ 31163151 (+)
G55926 NA non-coding downstream 406051 31542621 ~ 31547232 (+)
G55929 NA non-coding downstream 411961 31548531 ~ 31552162 (+)
G56021 NA non-coding downstream 917217 32053787 ~ 32057482 (+)
G56062 NA non-coding downstream 1030295 32166865 ~ 32168048 (+)
G55591 NA other upstream 1135712 29995126 ~ 29995438 (+)
G55573 NA other upstream 1219586 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 1956419 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 2022923 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 2119382 28928892 ~ 29011768 (+)
G56060 NA other downstream 1025190 32161760 ~ 32165365 (+)
G56368 NA other downstream 2864226 34000796 ~ 34031445 (+)
G56369 NA other downstream 2879100 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 3226849 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 4252344 35388914 ~ 35389327 (+)

Expression


Co-expression Network