AMCG00009275


Basic Information

Item Value
gene id AMCG00009275
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31150912 ~ 31184966 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009275
GGGGGAGCATTGATAGTGTTGCACACGGCGTGTCTGACCGGAGAAAGCAGAGCATGAAGTGAACACCCTTGAGTCCAGTGTAGAAATGGCTGGCCGGGTTCCTATTGTATTGCTGGCATGTGGCTCCTTCAACCCCATTACCAACCAACACATGCGGCTGTTTGAACTAGCAAGAGACCATATGCATCAAACAGGGCAGTTCGAAGTAATTGAAGGCATCGTTTCCCCAGTCAATGATGAATATGGCAAGCGAGGCCTGGTATCTGCAAAACACCGCGTTGCCATGGCACGGCTGGCCCTGCAGACCTCTGACTGGATACGAGTGGACTCCTGGGAGAGTGAGCAGCAGCAGTGGAGTGAGACGGTCGCCACGCTGAGGCACCATTATGACAGACTTCAGAACAGGCATCAGTCGAAGGAAAACTTGAATAATGTCTACATAAACAAGGCATACACACTCGACAATAAGTCCCCTACAGGAACACCGCGGCTTAAGTTGCTTTGTGGAGCCGATTTCTTGGAGACATTCAAGGTTCCCAAGCTCTGGAGGGAAGACCACATCGTCGAACTCGTCGGCAAGTTTGGCTTGGTGTGCGTCAGCCGTGCCCACCTTGACCCCTGCCGGCTGGTCCACGAGTCTGACGTCCTCACCAGGCACAAGCACAACATCTTTCTGGTCAGGGAGTGGATCCAGAATGAGATCAGCGCCACCGAGATTCGCCAGGCCATACGGCGAGGGCAGAGCGTCAAGTACCTCCTCCCAGACTCTGTGATAGAATATATTAAAGGCCACTGTTTATACACAGTGGAGAGCGAGCAGAAAAATGCTGATGGCATCCTTCAGCCCcttaaactgtttaaaaccCTTAATGATGACAGTGGGAGAGAAGGTGAACTGAAAACTGAGCAGGAAAGAAACCGGATCTCAACTCGGAGCAAAATGTCTACAGATTTTAATGGATATTGGAAAATGATCAGCAATGAAAACTTCGAAGAGTACTTGAAAGCACTGGATGTGAACGTCGCAATAAGGAAAATTGCAGGCTTGTTGAAACCTGATAAAGACATCATTCAGAATGGGGATCACATGGTCATTAAAACGCTCAGCACTTTCAAAAATTACAACATGGATTTCGAAATCGGGAAGGAGTTTGAGGAGGATTTGACCGGGGTGGATGATCGCAAATGCATGACCACTGTGACCTGGGATGGAGACAAGCTAGTCTGCGTTCAGAATGGAGAGAAGGAAGGGAGAGGATGGACTCAATGGGTGGAAGGAGACGAAATGCATTTGgaAATTAGGGCCTGTGGTGTGAAGTGCAAACAAATCTTCAAGAAGTCTGCACACCACCCAGAACTAACCTCAGTGAAAATGCCGGCAGATTTCAATGGAAGATGGGAGATGGAAAGCAATGAAAACTTTGAAGACTACATGAAAGCGCTTGataTAGATTTTGCTACCCGTAAAATTGCCCTACATCTGAGTCAGACAAAGGTATTTGTTCAGAATGGTGACAAGTTTGAGACAAAGACCCTGAGCACATTCCGAAACTATGAGGTGAGCTTCACAGTTGGAGAGGAGTTTGAGGAAACCACCAAAGGCCTGGACAACAGAGTAGTCAAGacTCTCGTGACATGGGATGGAGATAAACTGGTTTGTGTCCAGAAAGGCGAGAAACCCAACAGGGGCTGGAAGCATTGGATTGTAGGAGACAAACTGCACATGGAGCTGACATGTGGAGATAAAGTCTGTCATCAGGTGTTTAAAAAGAAGGATTGATGAAGACGTTTTGGGCCACAATGTTACTGCCATTATTGAATGGATTAAACGCCTGCGTGAATTGcatctattttaatttgtattaaaaggaacaacaaatatatttgtatgtgtcagaatttgtttaaaaatgaatgtttctgtttttttttattaactctGTAAGGGTGCTGGGGTGAGGCGATTAAAAGGTAAC
>TU69876
CTGGGGGAGCATTGATAGTGTTGCACACGGCGTGTCTGACCGGAGAAAGCAGAGCATGAAGTGAACACCCTTGAGTCCAGTGTAGAAATGGCTGGCCGGGTTCCTATTGTATTGCTGGCATGTGGCTCCTTCAACCCCATTACCAACCAACACATGCGGCTGTTTGAACTAGCAAGAGACCATATGCATCAAACAGGGCAGTTCGAAGTAATTGAAGGCATCGTTTCCCCAGTCAATGATGAATATGGCAAGCGAGGCCTGGTATCTGCAAAACACCGCGTTGCCATGGCACGGCTGGCCCTGCAGACCTCTGACTGGATACGAGTGGACTCCTGGGAGAGTGAGCAGCAGCAGTGGAGTGAGACGGTCGCCACGCTGAGattgTACCTGGAAGGGCAGGAAGTTTTGGacaataaaactggaaaaggAAAGTACACAacttaaatgaataattaaatgaaatattgtatGACAAAGTAATGGAGATAAAACATGTACTTAATATGTTGGTCGTACTGACCTAATGTCTTCCAGGTGTAGCCAGCTCACTAGTTTTTCTCAATTTCCTACAAGTGGGAGCTGGTTATAATCAATATAGACTCTGAATTGGGTGTGAAATTATACAAACAGAGAAGCAAACAGCATTCAGGTCATGGTGTGTTAATGGATTTACAAGCATGTTGAGTAATACCTCCGGTCTTTTTGGCAAACGGCATGCAATTTTTTATCTCTTACTAACAAGACAGCGGGAGCTACAGTAATTACTGGGCTCTCAGTAGACTCACCCTAGTGCAGCACAATACAAAGCCTTTAATGCTACATTGGCATTTCTATTTTGAGTGCCCTCTGGTTGTGCTAGGGGTGCCTAAgctgcctttaaaaatatagcAGCCCCTGTGATCATTCAGATTTTTGCAAGTAGGTGAAAAGCAGATGCTAATCTCACCTACTAGAACCTGCAAGGAGCTGTTCCATTTCAAATGCGTATTTAggtagtgttgttttttcatttaaagaaagCTGTTTTTCTCTCAGGTTTGTTctctgtgggggaaaaaaactatgTATGAAATTTCCACCAAATCATCAAATGCATTCTGCTATTCTAAAGATTTCCATCTTACATTAATATCTCATAGGAGCAATTTAAGTGCTTTTCTCTGTATGAGGCAGTGAATAGGCGATTGGATTTTGaaagaatgggggggggggaacttCATTTGAATGGTAATGTCATGATTGCCAGCCCTTGGGTGAATTTCTTTGAAAGCAATGAAGTGCTAGTCATTTTATAAAGCCTCCTTAAAGTAAGTGTTCTTTTCCTTAGTGGGCTTTGTAGTAGCTCTTTGTTAGTTAAGTGAATATTTAGGATACATTTAAGagattaaatatgtaattaatattttgtgctttttcaatATAAAGTTGTGCCCCCCTCTGTCACCCCCCCACCAATTATGTAGTCAGTACAGTTgacagaacaaaatatgtttgtcATGTTGGGTAATTATTTACTTGGAGATGCTGTAAGGTTTGCCATGAAGCTTAAAATGTACAGACTTACCAGGAGGAATAAAAATCAGAATAAGAGGACCCTGCCCGTGACCATGTAATTGAAGTGACCAtgctgatataaataaataaaaaaatatctatgaaTGCCCTCTATCATGTCACACTGCATGTGCACATCTTAAAAGCTCTTGTCCATGTACTTGGAGCTGGAGAGAGGTCTGGGGAAGTTGTTCTGTTGTGCTGCAAACACTTGTGACACGTTACAAATTGCTTTCTGTCCCTAATACAAATCCTCTCGTGAAAAGATTCATTTTAAGCTGCATTTCGTAAAGAGCTGATTAAAGCATGAAGTGGCCTCTTGTCTTTCTTGCTGGTGCCCGAAAGCCGACTCTCGTTCAAGTAATTGAAAGTTAGAGGAAAATCATGTACATCTCTAAGAGGATTATGGAAACAGTagcctttttttcttccccttatACTGCAGGCACCATTATGACAGACTTCAGAACAGGCATCAGTCGAAGGAAAACTTGAATAATGTCTACATAAACAAGGCATACACACTCGACAATAAGTCCCCTACAGGAACACCGCGGCTTAAGTTGCTTTGTGGAGCCGATTTCTTGGAGACATTCAAGGTTCCCAAGCTCTGGAGGGAAGACCACATCGTCGAACTCGTCGGCAAGTTTGGCTTGGTGTGCGTCAGCCGTGCCCACCTTGACCCCTGCCGGCTGGTCCACGAGTCTGACGTCCTCACCAGGCACAAGCACAACATCTTTCTGGTCAGGGAGTGGATCCAGAATGAGATCAGCGCCACCGAGATTCGCCAGGCCATACGGCGAGGGCAGAGCGTCAAGTACCTCCTCCCAGACTCTGTGATAGAATATATTAAAGGCCACTGTTTATACACAGTGGAGAGCGAGCAGAAAAATGCTGATGGCATCCTTCAGCCCcttaaactgtttaaaaccCTTAATGAGTAAATATTTCATTAGGTGATaatggattttcttttcctaggccgtatttagttttttccctcttcGTTCTCCCAATCTGAAAAGTAATACAAACAAAGCTTGTGCAAGCACACTATTTGGCACTGCATATTTATCTGCTCAGTGGGGAACATGgaggaaaatgtttaaaatgtgctatttgaggtgtgtttttttgtgttgtgaaaattaaattagGCCTTGGAAGGGTGCTCATGATAGTTAGACATGAAATTCACTAAAGCACAAACTCCCCTTTTCACCTGTTTAAAGTGAACTGAACAGAAATTAAGGAATGTAGTATAATTGCTCATTCTATACGGTAAACCCCACTTCTGATGCAATACCTGTATTTTCAGATCAATCCATTtcgtatatatatttttgtaggcTTGCTGAAGGACAGGGAAATCcctttaatatttgtatatatattttgtcatctGATGTTAAACATTGCTGCAATTGTGCGTGACCTTTAAAGTGTTTTGCCTTTCATAATACAGCAGGGTTACTGCACTTCATGATTTGAAATCTAGTCATAATCAACAGTGTGTGTATAAAGCCTTCGGATTGAGTGGAATAACAGATTGAATTTGACTTTACATGCTTTCTGCTACATCAAAATGTTGTTCCTGttacaaaactattttctgGAGAGGTTGTGCTAttcatataaacacattttataaccTGGATGTGAATCTGTAAACAGAACCAAAGGATGTGAGATATTGTATTTGATGAAACAGAATTGGTGAAGTATAAATGAACGTGGATTCTACAACAGAAAATAAGGatgtaatacaaacaatacaaacttGAAAATCTGAAACGTACCCTGTACAaggtttttctttattgttattcttcattaaatgctgattaatatgcaagttTAAGAGATAATGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009275 False 1976 mRNA 0.46 14 31150912 31184964
TU69876 True 3426 TUCP 0.40 5 31165011 31184966

Neighbor

gene id symbol gene type direction distance location
AMCG00009274 copb2,LOC106599054,LOC105021140 coding downstream 2112 31136569 ~ 31148800 (-)
AMCG00009272 foxl2,LOC101448029,LOC100136214,LOC106613173 coding downstream 83888 31066530 ~ 31067024 (-)
AMCG00009271 pik3cb,LOC106581359,LOC106613172 coding downstream 131104 30987124 ~ 31019808 (-)
AMCG00009270 NA coding downstream 180054 30947298 ~ 30970858 (-)
AMCG00009263 cab39 coding downstream 233290 30906868 ~ 30917622 (-)
AMCG00009280 spsb4,spsb4a,LOC108267127,LOC103021520,LOC108440634,LOC107743001 coding upstream 288787 31473753 ~ 31477141 (-)
AMCG00009279 slc25a36,slc25a36a,LOC107706334,LOC107668959,LOC108440632,LOC107694658 coding upstream 357696 31542662 ~ 31563060 (-)
AMCG00009282 epha4,LOC108440631 coding upstream 601803 31786769 ~ 31809463 (-)
AMCG00009285 pax3 coding upstream 697663 31882629 ~ 31900424 (-)
AMCG00009286 pax3 coding upstream 721760 31906726 ~ 31909194 (-)
G55861 NA non-coding downstream 334821 30809576 ~ 30816091 (-)
G55760 NA non-coding downstream 495891 30652912 ~ 30655021 (-)
G55722 NA non-coding downstream 658932 30491238 ~ 30491980 (-)
G55703 NA non-coding downstream 667539 30480779 ~ 30483373 (-)
G55648 NA non-coding downstream 914517 30236159 ~ 30236395 (-)
G55975 NA non-coding upstream 730202 31915168 ~ 31915373 (-)
G55991 NA non-coding upstream 765456 31950422 ~ 31950673 (-)
G56012 NA non-coding upstream 813111 31998077 ~ 32031970 (-)
G56163 NA non-coding upstream 1615569 32800535 ~ 32800895 (-)
G56185 NA non-coding upstream 1659129 32844095 ~ 32844336 (-)
AMCG00009269 NA other downstream 164917 30972953 ~ 30985995 (-)
G55881 NA other downstream 203701 30944367 ~ 30947211 (-)
G55878 NA other downstream 213661 30934564 ~ 30937251 (-)
AMCG00009265 NA other downstream 493300 30599474 ~ 30657612 (-)
AMCG00009241 NA other downstream 894413 30249871 ~ 30256499 (-)
AMCG00009332 NA other upstream 2822637 34007603 ~ 34026160 (-)
AMCG00009333 NA other upstream 2857110 34042076 ~ 34050737 (-)
AMCG00009342 kcnab1 other upstream 3042308 34227274 ~ 34274084 (-)
G56438 kcnab1a,kcnab1,LOC107671078,LOC107675612,LOC107566585,LOC108263953 other upstream 3054518 34239484 ~ 34316008 (-)
AMCG00009347 gmps other upstream 3149295 34334261 ~ 34362341 (-)

Expression


Co-expression Network