AMCG00009276


Basic Information

Item Value
gene id AMCG00009276
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31419840 ~ 31424011 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009276
TTCTGCCATGGGAGTGAACAGGGTGAAGAGATCCATCTACCAACACCTTACTTGTCCCTCCTGCAAGAAGCTCTTTTCCCAGCCTTACATTCTGCCATGTAATCACAGTGTGTGCAAGCACTGCATTGGAGTTATGAAGAAAAAGGCTTCCTGTGATGGAAGCAAAGCAAAGACAGTGAGGTGTCCAGTCTGCAGCGTAGAACACTGCTGTGCGCAAAACAGCACACTGGATTTCCCAGAAAACCATGTTCTGGGGAATATTGTGAGAAGACAATGTGAAAAGCAAGCTCAGTCAAAAAACAATTGCCCTCAAAGGAAGCAGCCTCTGGCAGGTGAACAGTTTGTCAACTGTGAGCTATGCCTGAAGGACAAGAAGCCTTCCGAAAGCCTCAATTTCTGCAAGAAATGTCTGAGGAAACTTCACAACAACCCTGCTTTCCAGTCTCACACCTTGATCGAACCTGCAAAAAAGCTGGGTGAATTAGCATGCTTCTACCACCCTGGAAAGATCTTGACGCACTACAGCTTTACCGATGGAAGAACCGTTTGTGAAGAGTGCACGAATGTCACCTCTGACACTGCGGTGATTTCTGAGGCTTATGTCAACAAATCAAGAGGCTTACATGCAGCTCTCGATCAAGCAGTGAAAGCAAAAGAACTGTGTCAATCTGACATCAGAGAGATTGGATTTTTAAAATCCAGACTTAAGCCACAAATGAAGGAGCTGAACAGAAGGGTGACTGAAGGATTCAAGGACTTGCACAAGAAGCTCACAGAAAAAGAGGAGGAGATAAAAGGAGTGATTGAGAAGTTGTACAAGGAAACTGAAGAAGATGCTGAGCAGCTCATCAGCGATTCctcaaaacatgtttatatccTGGAGGGTCTGGTTCAATTCTCTCACGAGTCCCTGAAGGAGAAGAATGAAACAGTGTTCCTGCAGGGCGTTGATAATACCATCTACCAGATCTGCAAGGTTTTAGATGCGAATTGCAAGTCCTGCGAGACCTTAAAACAAGAACCGCTTAAAAACATAACGGTAGACTTTAAAAGTATCACGGATGGTTTGAGCAAACTTTACACGGAGCATATCAATTATGAAAAACCTACCAAGAAGTTTGCTGCTCCAGGAACCATTACTACCTCCAGAGCATCTTTAAATGGTTCTGCTGTCCCAGTAGGAGGTCAACCTGTAGAGAGCACAGAAACGGAAGAGCAGAAACAGAATTCCGAGAACTCCAAAGACTCTGTGACCAGCCCACAACCGAAGCCTGAAATAACAGTCCCTAGAGAGAATCAGTCCAAGTCAAATAAAGTTCGTTTTAGGACATCTTCCAGTGACAAACTGAAGCATGAGAAGTCGGAGAAAACACCAGTCAGGAAAGCAGTCTGTGAAATCAAGGATGACATACTGCTGCCCAAACAACCATTCATCTACCGGCACATTGTGAATGGAGTCTCAGTCCAGATCATTTGGATGTTTCCCATTGGAGAGGGTATTAATTCTTTTGATGTTCATTTCCAAGAAGTAGTTTCTCTCAATTCCACCATGGATCTACCACAGGATCAAGGCAAGCTGGTCTCTGGTATAGAGAAATGCTCCTACAAAGCAGAGTGTCTGAATCCCAATGCCCAGTATATCTTCACAGTTCGGTCACAGAACACGTTTGGAGAGGGGCCATGGAGTCATGCTTAC

Function

GO: NA

KEGG:

id description
K12018 TRIM42; tripartite motif-containing protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009276 True 1696 mRNA 0.45 4 31419840 31424011

Neighbor

gene id symbol gene type direction distance location
AMCG00009278 NA coding upstream 7716 31394879 ~ 31412124 (+)
AMCG00009277 clstn2,LOC107561803,LOC107738117,LOC105912785,LOC107694660 coding upstream 49063 31355117 ~ 31370777 (+)
AMCG00009273 NA coding upstream 283270 31131150 ~ 31136570 (+)
AMCG00009258 NA coding upstream 472555 30944371 ~ 30947285 (+)
AMCG00009259 LOC103373082 coding upstream 483922 30928174 ~ 30935918 (+)
AMCG00009281 NA coding downstream 169037 31593048 ~ 31604365 (+)
AMCG00009283 NA coding downstream 496676 31920687 ~ 31940691 (+)
AMCG00009284 NA coding downstream 530660 31954671 ~ 31959897 (+)
AMCG00009288 acsl3b,LOC107567703,LOC106568845,LOC107745612 coding downstream 544808 31968819 ~ 31999086 (+)
AMCG00009292 NA coding downstream 584553 32008564 ~ 32009088 (+)
G55807 NA non-coding upstream 256689 31155518 ~ 31163151 (+)
G55800 NA non-coding upstream 469631 30947366 ~ 30950209 (+)
G55745 NA non-coding upstream 817808 30599474 ~ 30602032 (+)
G55707 NA non-coding upstream 922236 30495543 ~ 30497604 (+)
G55649 NA non-coding upstream 1177109 30236924 ~ 30242731 (+)
G55926 NA non-coding downstream 118610 31542621 ~ 31547232 (+)
G55929 NA non-coding downstream 124520 31548531 ~ 31552162 (+)
G56021 NA non-coding downstream 629776 32053787 ~ 32057482 (+)
G56062 NA non-coding downstream 742854 32166865 ~ 32168048 (+)
G56064 cul3,LOC100710156,LOC107384027 non-coding downstream 750296 32174307 ~ 32179259 (+)
G55591 NA other upstream 1424402 29995126 ~ 29995438 (+)
G55573 NA other upstream 1508276 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 2245109 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 2311613 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 2408072 28928892 ~ 29011768 (+)
G56060 NA other downstream 737749 32161760 ~ 32165365 (+)
G56368 NA other downstream 2576785 34000796 ~ 34031445 (+)
G56369 NA other downstream 2591659 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 2939408 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 3964903 35388914 ~ 35389327 (+)

Expression


Co-expression Network