AMCG00009277 (clstn2,LOC107561803,LOC107738117,LOC105912785,LOC107694660)


Basic Information

Item Value
gene id AMCG00009277
gene name clstn2,LOC107561803,LOC107738117,LOC105912785,LOC107694660
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31355117 ~ 31370777 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009277
GAgatttgtgcttttaaaattcATGGACAGGATGCCCCTTTTGAAGCGGTAGTGCTGAATAAGACATCTGGTGAGGGTCTCCTTCGAGCAAAGAGTCCAATTGACTGTGAACTTCAGAAGGAATACACATTCATCATTCAGGCGTATGACTGTGGAGCCGGACCTAGCGGAACAAACTGGAAGAAGTCACACAAGGCGGTGGTACACATCCAGGTGAATGACGTGAATGAGTTCGCTCCAACGTTCAGGGAGCCCATGTACAAAGCCACCGTGACTGAAGGCAAGATCTACGACAGCATTCTGCAGGTGGAGGCTGCAGACGAGGACTGCTCCCCCCAGTATAGTCAGATCTGCAACTATGAAATCGTCACTCCTGATATCCCCTTTGCTATCGACCGGAACGAGCAGCAGTTCAACATTATGGTGACGGCTTATGACTGTGGTCAGAAAGGAGCCACTGACAGCGTTCTTGTGCGCATCGATGTGAAACCTGTATGCAAACCTGGCTGGCAAGGTTGGAATAAGCGGGTTGAATATGAGCCTGGAACCGGTAGCAAGCagctatttccaaaaatgtatttggaaacCTGTGACGGCCCTGTCTCTTCTATCAGGACCAACGTAGAGCTGCAGACTAATCACATTGGGAAAGGGTGTGACAGGGAGACATACTCAGAGAAGTCATTGCAGAAACTATGTGGGGCCTCTTCAGGAAGTACAGATCTACTCCCTGCTCCAAGTGCTACTACCAACTGGACAGCTACTCTGCTGACTGACAGCGGACGGGACAGTGATCTGATTTTCAAGTTTGATGGCCGACAAGCGGCAAAGATTCCAGACAGAGTGGTGCCGAAGAACCTGACGGACCAGTTCACCATCGCCACATGGATGAAGCACGGTCCGAGCCCGGGCCTCCGAGCTGAGAAAGAAACCCTGCTCTGCAATTCAGATAAGACT

Function

symbol description
clstn2 Predicted to enable calcium ion binding activity. Predicted to be involved in positive regulation of synapse assembly and positive regulation of synaptic transmission. Predicted to be located in postsynaptic density. Predicted to be active in cell surface; glutamatergic synapse; and postsynaptic membrane. Predicted to be integral component of postsynaptic density membrane.

NR:

description
PREDICTED: calsyntenin-2

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009277 True 957 mRNA 0.50 5 31355117 31370777

Neighbor

gene id symbol gene type direction distance location
AMCG00009273 NA coding upstream 218547 31131150 ~ 31136570 (+)
AMCG00009258 NA coding upstream 407832 30944371 ~ 30947285 (+)
AMCG00009259 LOC103373082 coding upstream 419199 30928174 ~ 30935918 (+)
AMCG00009260 NA coding upstream 478085 30865491 ~ 30877032 (+)
AMCG00009264 NA coding upstream 508629 30838893 ~ 30846488 (+)
AMCG00009278 NA coding downstream 24102 31394879 ~ 31412124 (+)
AMCG00009276 NA coding downstream 49063 31419840 ~ 31424011 (+)
AMCG00009281 NA coding downstream 222271 31593048 ~ 31604365 (+)
AMCG00009283 NA coding downstream 549910 31920687 ~ 31940691 (+)
AMCG00009284 NA coding downstream 583894 31954671 ~ 31959897 (+)
G55807 NA non-coding upstream 191966 31155518 ~ 31163151 (+)
G55800 NA non-coding upstream 404908 30947366 ~ 30950209 (+)
G55745 NA non-coding upstream 753085 30599474 ~ 30602032 (+)
G55707 NA non-coding upstream 857513 30495543 ~ 30497604 (+)
G55649 NA non-coding upstream 1112386 30236924 ~ 30242731 (+)
G55926 NA non-coding downstream 171844 31542621 ~ 31547232 (+)
G55929 NA non-coding downstream 177754 31548531 ~ 31552162 (+)
G56021 NA non-coding downstream 683010 32053787 ~ 32057482 (+)
G56062 NA non-coding downstream 796088 32166865 ~ 32168048 (+)
G56064 cul3,LOC100710156,LOC107384027 non-coding downstream 803530 32174307 ~ 32179259 (+)
G55591 NA other upstream 1359679 29995126 ~ 29995438 (+)
G55573 NA other upstream 1443553 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 2180386 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 2246890 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 2343349 28928892 ~ 29011768 (+)
G56060 NA other downstream 790983 32161760 ~ 32165365 (+)
G56368 NA other downstream 2630019 34000796 ~ 34031445 (+)
G56369 NA other downstream 2644893 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 2992642 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 4018137 35388914 ~ 35389327 (+)

Expression


Co-expression Network