AMCG00009278


Basic Information

Item Value
gene id AMCG00009278
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31394879 ~ 31412124 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009278
atCTGTGATAAGGAGTGGCATTACTATGTCATAAATGTGGAGTTTCCTGTCGTGACCTTGTATGTTGATGGAGTAACCTACGAACCTTACCTCGTCACTGATGACTGGCCGATCCACCCCTCACAAATCGATATGCAGCTGACAGTGGGCGCATGTTGGCAAGGAGGGGAGGTGATGAAACCTCGATTCACCCAGTACTACCGTGGCAGCCTCTCTGGTCTGACCATTCGCCCAGGGAAGATTGAGAGTCAGAAAGTGATCTCCTGCCTTCAGGCCTGCAAGGAGGGCCTGGATATCAATTCTCTGGAGAGCCTGGGGAAAGGCATAAAGTTCCACTTCAACCCTGCACAGTCAATACTTGTCATGGAAGGAGATGACATTGAAAACATCAATCAAGCCCTAAGAAAAGTTTCGTACATCAACTCCAGGCAGTTTCCAACTCCTGGCATCAGACAACTTAAAATCTCAACCAGTGTGCAGTGTTTTGGGGAAGACACGTGCATCACCATCCCCGACATTGATGCCTTTGTGATGGTCCTGCAGCCCAGCGAGCCTCGGATCACCATCACTGGGGTGGACCACTTCACACGACCGGCGGCGGAGTTCGGTAGCACCAGAGGCCTAGCCCTGTTCCCCGATATCCGGATCATCAGCACCGTCACGAAGGCAGAGCAGCCAGCGGAGAGAGCAGCTCACCGGGCAGGTGTGCTGGAGGAAATCATTCATAACTTGGATTATTGTGATATTCTGGTAATCGGGGAGGAACTCAATCCAGACCGAGAGAGCCTACATCTGAACCGAAATGAGCTGCATGGAAAACACCTGGACGCAACAAACTCCACTTCAGGAATCTCCATCTATGGTGTGGACTCCATGTCCAATTACGAACAAGTTATCCGGCAGGTGCGATACCAGAACTGGCACAGCGCTGAGCTCTTTGAAAGGAAGTTCAGACTAACATGCTCAGAGCTAAATGGAAGATACACTAGCAATGAATTCAATTTAGAGGTTAATGTCTTACACAACTCAGATTTCATGGAGCATGTAAATCACATGGCGGTTGAGTCTCAGTACCTCCAGGCAATTCACCTTCCAGTGATGGGGCACAATTTAAACAGCGCTCACGGCTCAGCTATCCCAAGTGCTGCCACAGTGGTCATTGTGGTGTGCATTACCTCCCTGGTCCTGATCATAGTGCTGGGCATCTACAGGATCCACGTAGCTCATCAACGATCCTCCAAAAACGGAAACGGAGCGAAAGAAAATGAGATGGATTGGGATGACTCGGCCCTGACTATTACAGTCAACCCGATGGAGAATTATGAAGAGCCACAGCCCGCCGAGGAAGAAGTAAGTGAGGAAGAGGACGGAGATGAGGAAGACGTGGAGGAGGATGACATCACCAGTGCCGAGTCAGAAGACAGTGAGGACGAGGAGCCTGTGAGGCCCGGGGGGCCGCAGGATATCAAGAGACGTACTCAACTGGAGTGGGATGACTCGACGCTACCTTACTAG

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009278 True 1515 mRNA 0.51 9 31394879 31412124

Neighbor

gene id symbol gene type direction distance location
AMCG00009277 clstn2,LOC107561803,LOC107738117,LOC105912785,LOC107694660 coding upstream 24102 31355117 ~ 31370777 (+)
AMCG00009273 NA coding upstream 258309 31131150 ~ 31136570 (+)
AMCG00009258 NA coding upstream 447594 30944371 ~ 30947285 (+)
AMCG00009259 LOC103373082 coding upstream 458961 30928174 ~ 30935918 (+)
AMCG00009260 NA coding upstream 517847 30865491 ~ 30877032 (+)
AMCG00009276 NA coding downstream 7716 31419840 ~ 31424011 (+)
AMCG00009281 NA coding downstream 180924 31593048 ~ 31604365 (+)
AMCG00009283 NA coding downstream 508563 31920687 ~ 31940691 (+)
AMCG00009284 NA coding downstream 542547 31954671 ~ 31959897 (+)
AMCG00009288 acsl3b,LOC107567703,LOC106568845,LOC107745612 coding downstream 556695 31968819 ~ 31999086 (+)
G55807 NA non-coding upstream 231728 31155518 ~ 31163151 (+)
G55800 NA non-coding upstream 444670 30947366 ~ 30950209 (+)
G55745 NA non-coding upstream 792847 30599474 ~ 30602032 (+)
G55707 NA non-coding upstream 897275 30495543 ~ 30497604 (+)
G55649 NA non-coding upstream 1152148 30236924 ~ 30242731 (+)
G55926 NA non-coding downstream 130497 31542621 ~ 31547232 (+)
G55929 NA non-coding downstream 136407 31548531 ~ 31552162 (+)
G56021 NA non-coding downstream 641663 32053787 ~ 32057482 (+)
G56062 NA non-coding downstream 754741 32166865 ~ 32168048 (+)
G56064 cul3,LOC100710156,LOC107384027 non-coding downstream 762183 32174307 ~ 32179259 (+)
G55591 NA other upstream 1399441 29995126 ~ 29995438 (+)
G55573 NA other upstream 1483315 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 2220148 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 2286652 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 2383111 28928892 ~ 29011768 (+)
G56060 NA other downstream 749636 32161760 ~ 32165365 (+)
G56368 NA other downstream 2588672 34000796 ~ 34031445 (+)
G56369 NA other downstream 2603546 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 2951295 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 3976790 35388914 ~ 35389327 (+)

Expression


Co-expression Network