AMCG00009281


Basic Information

Item Value
gene id AMCG00009281
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31593048 ~ 31604365 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009281
AATTTAATGGAGGTTTGAATATGTTAAGCTATTCTACTGTCATCTTAAGCTCAaagttcttgttttctttcgCCGCTTGATTTTTAATGTCTTATAGTGCACTTGATTCCAACCACACCGTTAAAAGAAGTCCAGCAACATGCCAAAAGCAGAAGGATTACTGTTCCCATCCCCTACACAGAGCCTCCAGTCTTGGACCCTATTTATGAAGCCTATGCATACTGCAACATTCCCAACAGAACGGAGCACAGCTGGGAAGGTCACAGCCCCCCTGATTATAAACTGCTGTCAGTGCAAGTGATGATTCGCCATGGTGACCGATATCCACTCTATTCCATTCCTAAAACCAAAAGGCCAGCTATTGACTGTACTTTGGTACCAAACAGGAAGCCCTCCCACCCTCGGCTGGCCGCCTTCATTAGTCACATGTCCAAAGCAGAGAGGGGCCAATGGGACAGTGCGATGAGCGCGATTCCCAGACTGCCCAGCCACACGGTGTGTGAGATGGGAGAACTCACACAGACAGGTATTGTACAGCATCTACACAACGGCCAGTTACTGCATGACACCTACATAAAGAAACACAAGCTGCTGCCTAACAATTGGGGCAGCAAGCACTTGTACATAGAATCGACCCGTAAGAGCCGGACCCTTCAGAGTGGCCTGGCCCTGCTCTACGGACTGCTGCCCGAGTTCGACTGGCAGAAGGTCAACGTCCGGCACCAGTGGAGCACCATCTTCTGCTCTGGCAGCTGCGATTGCCCCATGAGGAACCACTACCTGGAGGAGGAGCAGCGGAGGCAGTACAACCTGCGCGTGAAGAACACCTTGCTGGAGCAGACCTACATGGAAATGGCCAAGATAGTGGGGGTGCCGACGCGGCAGCTGAGAGCGGCCAATCCCATCGACTCTCTCCTGTGCCACTTCTGTCACAACATCACTTTCCCCTGCACCCAGAACGGCTGCATCAGCCTGAAACACTTCTCTGTCATCAAGGCCCAGCAGCTGGAGGACAAGAAGGACAGACACGAGAAGAAACTGTATTACAAGTACTCCCTGCTGGCCACCCACCCTTTCCTGAACCAGACAATCGCCCGCATGCAGAGGATAGCACAGGGGCGCAAGGATGAGCTGTTTGCCCTCTTCTCTGCCCACGATGTCACCGTGGCACCATTGCTCAGTGCCCTGGGGCTCTCTGAAGCCAGGTTCCCCAGATTTGCTGCCCGGATCACGTTTGAGCTGTGGAAGGGTGCGAAGGACAAAAACGACCTCTACGTCCGTATTCTGTACAACGGAGAGGACGTGACTTTCTTCACCTCATTCTGCCAGACTCACAGCAGGCATTCCGGCCCAGGCCTTTGTCCTTTCAAAAAGTTTCTCAATTTTGTGAGGAGGGACATGTTTGCCATCTTCAACAGCACTAATTACTTTGACGCTTGCCATAGGCGAATACTGTAAGTTGTTCATTCTGAAGCCACCAGGTTTAGTTGCAACTAATTGCTTGATGTCACCAGCACAGCAGTtgtcatatttattaatttatatttataggttaggaatgttatttttttgtttagtttagtcttTTTTAAGGTTGCCTTTTTGGCTAGTTAGTGACTTTGCTCATCTGTTCAAAATGTCACTGGAAATTCACTTACATAACTAGTGTAATGAATAGGTTTGCCTCATTTGCATTAttagaaaatatgaatatataatagtTCTTCAAATGGCATTGTAAcgtacttaattatttaatactattatttttgGGAAAATAATGGCGGTGCTTACgaaaacaatttacaataaaccAGTGTTACTGGTTTACAAATACCTTAAACAGTGTGCTCAGCATATCTTCTTCTGAACAGTAGATGGAgctaaacacttttttttcattcttcttgcTTCCTGAAGAATACTTGAAAAATCACTTTAGCTGGAATAGTACATTGCACATAAAAGCAGTTTTTAGATGCATAACTGTTAATAAAAGGAGTATAGAACAGGAGTTGTTTGAAAAAGTATAACCAAAACAATTTTATATCGCACATTCCAGTGGCAGGGAGTTTCTGTAACTTTGTTACTTCGTGGCcagtacattttatacatttccaagttattaataaagcaaaagaaccaatacaataatatattgtaatatgaaGACCACATGGATAGGAGGGTGAGATCAGTTGGTTTGCTGGAGTCATCTGACCATCATTCAGCAGCCGATCGACAAACGGTGATGATGAagatacattgtgtgtgtgtgtgtgtgtaaaacacaattgttgtttttatgatcTTCCTGCTGTATGCCACTCTCCATACTGTTTACCTTTTTAACAGCTGCAATATTACATTGTCTAAATCTACTGCACAAAAACGATGCATCTCaaaattttgtaatttgttttttatgtttcaaaAATTTGTCccgttttttttctctgtacacttgacttatattttgttttattttatctatatatttttctgctgGAGTTTAATTCCTGTTTCATTCAACATACTTTTATAATCCTGTTCCCACactaaaaatgtgtgttttgacaaTTTATAACTGTATTGGgggatttcaatatttttataaatttagAATAACATGCAGCACAAAACTAAATTGTAGCAGATATCAGATTCTTGTTTAAAGTAGatatttctagattttttttctagAGTTCTTTTCAATAATGCATATCTACTTGTTCATGTATAGTTGTTGg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
K21403 PXYLP1; 2-phosphoxylose phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009281 True 2750 mRNA 0.42 4 31593048 31604365

Neighbor

gene id symbol gene type direction distance location
AMCG00009276 NA coding upstream 169037 31419840 ~ 31424011 (+)
AMCG00009278 NA coding upstream 180924 31394879 ~ 31412124 (+)
AMCG00009277 clstn2,LOC107561803,LOC107738117,LOC105912785,LOC107694660 coding upstream 222271 31355117 ~ 31370777 (+)
AMCG00009273 NA coding upstream 456478 31131150 ~ 31136570 (+)
AMCG00009258 NA coding upstream 645763 30944371 ~ 30947285 (+)
AMCG00009283 NA coding downstream 316322 31920687 ~ 31940691 (+)
AMCG00009284 NA coding downstream 350306 31954671 ~ 31959897 (+)
AMCG00009288 acsl3b,LOC107567703,LOC106568845,LOC107745612 coding downstream 364454 31968819 ~ 31999086 (+)
AMCG00009292 NA coding downstream 404199 32008564 ~ 32009088 (+)
AMCG00009291 NA coding downstream 446139 32050504 ~ 32052393 (+)
G55929 NA non-coding upstream 40886 31548531 ~ 31552162 (+)
G55926 NA non-coding upstream 45816 31542621 ~ 31547232 (+)
G55807 NA non-coding upstream 429897 31155518 ~ 31163151 (+)
G55800 NA non-coding upstream 642839 30947366 ~ 30950209 (+)
G55745 NA non-coding upstream 991016 30599474 ~ 30602032 (+)
G56021 NA non-coding downstream 449422 32053787 ~ 32057482 (+)
G56062 NA non-coding downstream 562500 32166865 ~ 32168048 (+)
G56064 cul3,LOC100710156,LOC107384027 non-coding downstream 569942 32174307 ~ 32179259 (+)
G56120 NA non-coding downstream 943642 32548007 ~ 32553904 (+)
G56211 ppm1l,LOC108430727,LOC105935930 non-coding downstream 1343772 32948137 ~ 32950966 (+)
G55591 NA other upstream 1597610 29995126 ~ 29995438 (+)
G55573 NA other upstream 1681484 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 2418317 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 2484821 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 2581280 28928892 ~ 29011768 (+)
G56060 NA other downstream 557395 32161760 ~ 32165365 (+)
G56368 NA other downstream 2396431 34000796 ~ 34031445 (+)
G56369 NA other downstream 2411305 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 2759054 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 3784549 35388914 ~ 35389327 (+)

Expression


Co-expression Network