AMCG00009283


Basic Information

Item Value
gene id AMCG00009283
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31920687 ~ 31940691 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009283
GGCCGCTCACCTGTGCGCACCTGCGTGGCGCCGCTGTGTCGGgctgggccgggccgggccgggatGCGCACATATTGCAAAAGCAACGAGGGACAGGATTATACTGCGGCTCGTCCACAGCAGGGGCGCAGTGATGGCACACTTTGTAAAGCACCTGCTAGACTCGACGTTAGTGTCCAGGTTTCAAAACAGCTGTGGTTTATTTGCCACCGAACCGGATGGTTTCCCGCCAAAAAAGCAGGATAGCGAGAGCACGTCGAGTCGTGGTGTGAGATCAGAAAGTAACACGAGAAACGGGTTCAGTGGCAATGGCACCGGCGCCTCGGAGCAACCCCGCAGCAATGCCAAGCGCACACACGATGTCAGCGGACGGGTGGTGAAGAGTTCAAGTCCAAAGTATGTCGTGAAGAATTACTTCCTGTACTACCTGTTTCGGTTTGCTGCTGCACTTGGCCAGGAAGTCTTCTACATTACGTTCCTGCCCTGCACACACTGGAACATGAACCCCTTCCTTTGTAGGAGACTTGTCAACATGTGGGCAGTGATCATGTATATTGGCCAGGTAACGAAGGATCTTCTGAAGTGGCCTCGTCCGTTCTCCCCTCCTGTGGTCAAGCTTGAGCCCAGAGTGGACGCAGAGTATGGAATGCCCTCTACACATGCCATGGCGGCAACATCCATTTCCTTCACCTTCCTGCtcagcaccatggacagatATCAGTATCCGTTTGAGCTGGGATTGATGGCAGCAATACTGTTTTCCACTCTGGTGTGTCTCAGCCGGCTGTACGTAGGCATGCATTCAGTCCTGGATGTGATCTGTGGAGTTTTAATTGCAGGCGTGGTCATGGCCATTACCTATCCTGTCTGGGATACCTTTGACCACCTGCAAGTAACAAGCCCCTACTCCCCCATCATCGCAGTGGTACTGCCCTACCTCATGAGTCACTTCTACCCTCGGCTAGACCATTACAGCACGACCAGGGGGGACACCACCATAATCCTGGGATCGGCAGCGGGATGCTCCATCGGCTACTGGGTCAATCACCAGCTTGGGGAAACGTACGAGCCGACAGGAGGGTTCCCGCTCGCCATCCCCGCCATGACCCTGGCCGTGGTCGTGTACAGCTGTGTCCGTTTTGCGATTGGGATTGCATTTCTAGTGGTTACCAGGCAGGTCATGAAGAGCCTCAGCCTATTTGTGCTTTGTTCTTGGTTTCAGGTTTCAAAGGAAGACCGAAAGGCCAGGCAGAGGCTAGAAATCGAAGTGCCATACAAGTTTGTGACATACTCTGCAGTTGGCATTACTTCTACAGTCCTAGTCCATAAAACTTTAATTATTCTAGGATTATTCTAGAGGAATCTCGTGTTACAtgaaagattgttttttaatatcacATATGAGTATTGTTTACAGCTCCATTGATCTTTATACAAAGTTGCAGTTCAACAGATCTCTGAATCTCAATTTTCTACTACTGTTTTCTGGCAAAAATAGCAAAGTCTATGAGCTGAATGAATGTAAAGGTCATGCTAAGGTTGAATTAAGCATATATTGATGATCAGTAACTTTGATTGATATCTTTATAAGTGTCAGTTTTCCCTAGCTGAGTGTATCCTGTAATACAGAGCAGtgacaaaataacttttttgtgaGATTAACTGCTACATTGGCTATGACTTGAATGAATGATTGTATTGATCTTTAAacgaaatacattatttcacaaaTATGGTAGGATACAACATTTTATGAGagctttacatatatataattttttcatCTGAAGTCAATATGCACATCCTACCTTTAATTACTTTGGTgagtatgttattattttaggttattcttttttattttatatatcctttttattaaataataaatgcagcaTTGGACATTGATACTGTGAAATGACTGTTTTACATGGTAATCTTTCTGCAGCGTCCTTGCTTTGGCTCGCGTATGGTGTGAGGGGTATAATATGACAATATTCATAAACTGGCAGTGCTTGTTTTTATGTTACAATGGTGTATTGGTGCTGCacataaaacataagaaatagCCTTACTCTGGGAGTTTTTGTGTTCAATTGTGAATTTGTGAAACTGAAATCTCGTAAGACATCACTATACACATGTTGTGTATCTGGTTTGTACTAAGCATACATTTTAAGGCTAGAATGTGGCCTTGTTGGTGAAAGCATTGAAATGTGAAGTTTTGTTACACGGTGTAAATATGGGTTTTGCCACTTTAAGCTTCTTTAAATGTCTCTGCCTTATGTAAATAAGGAGGTATGGCCTAACacagtgctttatttaaagtgtttgtcTAACAATTCTCTGACTGTCATTGGAGATATATTCAGAGTTTATATAAAGCCTATTTTATTCTAAGAccagctgtattttattaaggtATTTGTGTCTACTGGATGAAAACCGAAAGGTGACCATGCAATTGTTTATTAAAGGGATTTGGGTAAAGATTAGATTAAATTTATAACCACGGGCAAGtcatttgcttaattatttCAATGCCAATATTTTGAAGTAGTTTGTGCGAAGCTGCTGTACCTAAATTTGAATTCCTTTCTGGTgctgaaattaatgtttttaatcatgtaaattacagtacattcatgtctgtgtttgtgaattatAAACAGCAGTGTTTTCAATACACTACAAAAGGTGTTTCGATatggtattgttttaatttactgctATTGGTTAGTGTTATTGCAGATGACTGCTTGGCCCTGTTGCTCTCACTGTTGAGGTATTTTGGGGATAGTGTTTTAGTCATAGGGTTCCATTTATGTTGTTGTAGAGTAACATTGTGGTGTAGGATGTTACTAAATCATTGATGCACATCATGTTGGAAATGTGTTGTCCACAATATATAATGCAGAACATCCTCTAACTATTTAATGTGATTGTGACA

Function

GO: NA

KEGG:

id description
K04717 SGPP2; sphingosine-1-phosphate phosphotase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009283 True 2947 mRNA 0.42 5 31920687 31940691

Neighbor

gene id symbol gene type direction distance location
AMCG00009281 NA coding upstream 316322 31593048 ~ 31604365 (+)
AMCG00009276 NA coding upstream 496676 31419840 ~ 31424011 (+)
AMCG00009278 NA coding upstream 508563 31394879 ~ 31412124 (+)
AMCG00009277 clstn2,LOC107561803,LOC107738117,LOC105912785,LOC107694660 coding upstream 549910 31355117 ~ 31370777 (+)
AMCG00009273 NA coding upstream 784117 31131150 ~ 31136570 (+)
AMCG00009284 NA coding downstream 13980 31954671 ~ 31959897 (+)
AMCG00009288 acsl3b,LOC107567703,LOC106568845,LOC107745612 coding downstream 28128 31968819 ~ 31999086 (+)
AMCG00009292 NA coding downstream 67873 32008564 ~ 32009088 (+)
AMCG00009291 NA coding downstream 109813 32050504 ~ 32052393 (+)
AMCG00009289 NA coding downstream 120122 32060813 ~ 32066699 (+)
G55929 NA non-coding upstream 368525 31548531 ~ 31552162 (+)
G55926 NA non-coding upstream 373455 31542621 ~ 31547232 (+)
G55807 NA non-coding upstream 757536 31155518 ~ 31163151 (+)
G55800 NA non-coding upstream 970478 30947366 ~ 30950209 (+)
G55745 NA non-coding upstream 1318655 30599474 ~ 30602032 (+)
G56021 NA non-coding downstream 113096 32053787 ~ 32057482 (+)
G56062 NA non-coding downstream 226174 32166865 ~ 32168048 (+)
G56064 cul3,LOC100710156,LOC107384027 non-coding downstream 233616 32174307 ~ 32179259 (+)
G56120 NA non-coding downstream 607316 32548007 ~ 32553904 (+)
G56211 ppm1l,LOC108430727,LOC105935930 non-coding downstream 1007446 32948137 ~ 32950966 (+)
G55591 NA other upstream 1925249 29995126 ~ 29995438 (+)
G55573 NA other upstream 2009123 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 2745956 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 2812460 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 2908919 28928892 ~ 29011768 (+)
G56060 NA other downstream 221069 32161760 ~ 32165365 (+)
G56368 NA other downstream 2060105 34000796 ~ 34031445 (+)
G56369 NA other downstream 2074979 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 2422728 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 3448223 35388914 ~ 35389327 (+)

Expression


Co-expression Network