AMCG00009291


Basic Information

Item Value
gene id AMCG00009291
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 32050504 ~ 32052393 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009291
ATGTCTCTTCCCAAGTTCCCCATCGCCGGAGCTGTGTTTATTGTCACTAGCCTTCTTCACACTTGTTGCATTCATGGTGCGTCAGTGAGACAACACAAGCTGAGAGAAAATGAACCCGACAACAGACGCAAAAGCCCTTACTTGGTGCCTAACTCCGACATGGTTAAAGCCTTGGAGTACATAGAACAACTCAGGCAGCAGACGAACGATGAAGAGGCGATGCCTGACTATGACGACATAGAAAAGTTCCGCTCCATGCTCAGGCTCGCTCCGGTCCAAAACATAGAGAGCCCCGATCAGGGCATCGTCCCCGACGCAAGGGCCACCTGGCCGGAAGATAAATCCCAGTGGCTTAAAATTTTGCTCCGATCTCTCCAGCGCGCCGAGAAGGAGTCCAAAGCGCCCCCCACACTGGCCGACACCCGATACGCGTACAACCACAGGCCGGTTCCAGAAGAAGGTAACCCTGCAGCTGATCTGGATGATTACAGGGACAACCCCTTGCCTGAAAGGAGCAAACCATTGAAGAAGTACCCGTTGCTGTTTGAAGACGAAGACTCCAGAGAAAGCCCCTACAAGAGAACCAACGAAAACGTGGAGGAGCAATACACTCCCCAGAGCCTCGCCACCCTGGAGTCTGTTTTCGAGGAACTGGGGAAGCTCTCCACTCCCAACAACCACAAGCGCGACAGTCTGAACGAGGACCAGAAACTCTACCGGGACAACGACGACGACATGTACCGAGTCAACAACCTGGCTTACGAAGACGTGGCGGGGGGAGAGGACTGGACTCCCGTGGAGGAAAAAGTGGAGACAGAGACGGAGGAGGTGAAAAACAGCCGGGAAGAGTTCGACCGAGATTCCGAGGAGACGGACGACGAGGTCAAGAGATCCAGCCCCAGCAAATATGTCGAGAAGGCCGACCCGGACGACTTCACCAAACTTGTGGATTACTACCTGTTGCGGTTCCTGGAACAGAGCGAGCGGCCGGAGGACAAGCGAGACCGCAATGACAGACCCAAAGAGGCCCAGAACAGCGACAAACGGGCGGCGAGACCCCTGGGATCTTATGACATTGACCCCCAAGCCATCTACCAGTTGATTGAAATATCGAGGAAATTACAAATCCCACCCGAGGACTTGATAGAGATGCTGAAAAGCGGGGAGATCAAAAAGCAAGACCGAGTGCTCCAGACGGAGGTGGAACCTGAAGTGCCGGAAGATCTGGACCGAATTGAAGAAAAGCTCAGCCAGATCTCCTCCTACAGCAAAGACAAGGCTGTCAACAAACTTTACAACAGGCGGCTGCCAGAAATGCTGCCGAATGACATTCCTGACGATCTGACCACCGACGAGATCTTAAATATCCTTGGACTGGAAAGCATAGGCAACCAGAACccaaagtatatattaaaacaaatgcaatcgAAGAATGCGCACTCCAGGTTCTCGCCTCCCGGTGCCCGGAGAGGGGATTACGTGATGGCTGAGCCCAGTGCGCTATCCCGCGATTACGATAAACGCAGAGTGGATTATGATGAAGCTACCGATGAAGACGAACTGGCCACCTATCTTGCTGCAAAGATGCTCACCAAGTACCCCAAGATGATCAACAAACTGGACCTCAAGCGCGCTGCCCAACCTTCCTCCAAAGAAGACCAAGTAGCCTATGGGACTTATGAGCAAGCAATGAAAGATTACTTTGATCAGATTAGCTCAGATAACACCTCGCCAGCCAAAAGACTGTCCGAGGGCGGAGAGATGGCTGAATCCCCCCAAACGCAGCGCTTGGACGAAGACATGCTGCTGAAAATGCTGGGCTATCTAAACCAAGAGACCGGCGAAAACGAAGAGAGAGACGTTTATGGCAAAAAAGTAAACGGAATGTAA

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0042221 response to chemical biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009291 True 1890 mRNA 0.52 1 32050504 32052393

Neighbor

gene id symbol gene type direction distance location
AMCG00009292 NA coding upstream 41416 32008564 ~ 32009088 (+)
AMCG00009288 acsl3b,LOC107567703,LOC106568845,LOC107745612 coding upstream 51418 31968819 ~ 31999086 (+)
AMCG00009284 NA coding upstream 90607 31954671 ~ 31959897 (+)
AMCG00009283 NA coding upstream 109813 31920687 ~ 31940691 (+)
AMCG00009281 NA coding upstream 446139 31593048 ~ 31604365 (+)
AMCG00009289 NA coding downstream 8420 32060813 ~ 32066699 (+)
AMCG00009293 NA coding downstream 63085 32115478 ~ 32119196 (+)
AMCG00009298 NA coding downstream 130732 32183125 ~ 32196353 (+)
AMCG00009304 NA coding downstream 469125 32521518 ~ 32533407 (+)
AMCG00009305 gfm1 coding downstream 481484 32533877 ~ 32548495 (+)
G55929 NA non-coding upstream 498342 31548531 ~ 31552162 (+)
G55926 NA non-coding upstream 503272 31542621 ~ 31547232 (+)
G55807 NA non-coding upstream 887353 31155518 ~ 31163151 (+)
G55800 NA non-coding upstream 1100295 30947366 ~ 30950209 (+)
G55745 NA non-coding upstream 1448472 30599474 ~ 30602032 (+)
G56021 NA non-coding downstream 1394 32053787 ~ 32057482 (+)
G56062 NA non-coding downstream 114472 32166865 ~ 32168048 (+)
G56064 cul3,LOC100710156,LOC107384027 non-coding downstream 121914 32174307 ~ 32179259 (+)
G56120 NA non-coding downstream 495614 32548007 ~ 32553904 (+)
G56211 ppm1l,LOC108430727,LOC105935930 non-coding downstream 895744 32948137 ~ 32950966 (+)
G55591 NA other upstream 2055066 29995126 ~ 29995438 (+)
G55573 NA other upstream 2138940 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 2875773 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 2942277 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 3038736 28928892 ~ 29011768 (+)
G56060 NA other downstream 109367 32161760 ~ 32165365 (+)
G56368 NA other downstream 1948403 34000796 ~ 34031445 (+)
G56369 NA other downstream 1963277 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 2311026 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 3336521 35388914 ~ 35389327 (+)

Expression


Co-expression Network