AMCG00009298


Basic Information

Item Value
gene id AMCG00009298
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 32183125 ~ 32196353 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009298
ATGAGTTACTTGACAGACTACACTTGGGATGtgaagaaggagaggaagaagaggaggagaagaaaaaacaacatcccCAGTCTTGCAGCTTGGTTAGCTGGATGGACCTCCGAGTCTCTCGTGGAGATGTATGGATTTATTAACACATGTTTAAAGTCTTTGGTGATTGACAAGTTCGGAGAAGAGACGTGGGACAAGCTAAGACATGAAGCTGGGGTTCAGGACACTTTCATGACATTTGAAGTATACAAAGATGACATCACAATGCGATTAGTGGAAGGAGCCTGTCAACTCTTAGATGTGGCCCCGGACATTGTTTTGAAGCAGTTTGGGGAGTATTTCTTTGAGTTTTGCAAGAGATCTGGCTATGACCACATGCTCAGGACTCTTGGTGGAAACCTGTTTGAGTTTATTGAAAACCTGGATGCACTACACAGCTATTTGTCCCTGTCTTATCAGGAGATGAACGCCCCCTCGTTCAGGGTGGAGAAGAACGAGGACGGCACTATGCATTTACACTACTATTCTGATCGTCGAGGGCTGTGTCATATCGTTCCTGgtATAATTGGAGCTGTGGCAAAGGATTTTTTCAACAGTGAAATCACAATGGAAATAGTGAATCAaatggaggaagaggagaggacAGGCAAAAAGGAgcacattgtttttcttgtcactCAAAAGCTGGCCTTTTCAAACAAGAGACGGAGCAAATTGGCACCAACACCTCAGTATCTCGCCAATGCACGTCGACAAAGTGAGAAGCAGTTAAATAAAGAGGATGTTGAAAAGTCAATGCACAAAATCAGAAGTAAAGGCTGTTCCATGTTAGCATGTCCCATGAAGAAGAACCACTGGGAAACAGTACGAGGGATTGTGAAACTGGGCAAGGGTAAACTTCTGAGAGGATTTGAACCAGTTTACCCCGAGATGCTCTGcatagatttaaaaacattttgtaatgcatttcctttCCACATTGTATTTGATAAGGAGCTCCGGGTGAAGCAGGCAGGAGTGAACATTCAGAAGATTGTCCCTGGACTACAGACTATGGGAATTCGTCTTGACCAGTATTTTACCATCATCCATCCAGAAGTGACTTTCACCATCTCCAGTGTGAGGAAGTTCATCAACAGCCAGTTtgtcttgaaaacaaaaagagacaTGATGCCCGAATCCTGGAAGAGTCGTCCAATGCTAGAATTAAgagGTCAGATGGTGTGGATGGACTGTCTTCAGAGCATGCTGTACCTGGCCTCCCCTCTCCTGCGCAGTCTGCATGAGCTGGAGGAAAGGCAGATGCACATCTCTGACATCGCCCCCCACGACGTTACCAGGGACCTGATTCTTCTCAACCAGCAGCGGCTGGCGGAGATGGAGCTGTCCAACCAGCTGGAGCGCAAGAAGGAGGAGCTGCGCATCCTGTCTAAGcacctggaggaggagaagaagaagaccgAGGCCCTCCTGTATGCCATGCTGCCCAAACACGTGGCCAATCAGCTGAAGGAAGGCAAAAAAGTCGAGGCAGGCGAGTTTAAGGAGTGTACAGTTCTCTTCAGCGATGTCGTGACTTTCACCAACATCTGTTCCGAGTGTGAACCTATTCAGATTGTGTTCATGTTGAACTCCATGTACCTCAAGTTTGACCGGTTAACCACCGTTCATGATGTTTTTAAGGTGGAGACAATTGGTGATGCCTACATGGTAGTGGGAGGGGTGCCAATCCCAGTGTTGAGCCACGCAGAACGGGTGGCGAACTTTGCCTTGGGAATGATCATTGCAGCAAGAGAAGTGATGAATCCAGTCACAGGGGAACCGATACAAATCCGGGTCGGCCTGCACACTGGGCCCGTGCTGGCTGGCGTGGTGGGGGAAAAGATGCCGCGCTACTGCCTGTTTGGAGACACGGTGAACACGGCCTCTCGGATGGAGAGCCACGGAATTCCTAACAAAATCCATCTGAGTCCCAGCACCCATCAGGCTTTGATAGGCaaaggctttaaaataattcaacgGGGGGAGATTGAAGTGAAAGGCAAAGGGAAGATGCACACCTACTTCCTGGCGGGGAACCTGACTGCCACGGATAATGAGATCATGGGACGACCAGTGAGGGAATTGGACTCTGGGAGGGAGTCAGCCCAGTCTATACAAGAGCACACTATGGAGGTTTTAAGAAGGCCTGGCCCTCGGGGTTAG

Function

GO: NA

KEGG:

id description
K12319 GUCY1B; guanylate cyclase soluble subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009298 True 2205 mRNA 0.48 14 32183125 32196353

Neighbor

gene id symbol gene type direction distance location
AMCG00009293 NA coding upstream 63929 32115478 ~ 32119196 (+)
AMCG00009289 NA coding upstream 116426 32060813 ~ 32066699 (+)
AMCG00009291 NA coding upstream 130732 32050504 ~ 32052393 (+)
AMCG00009292 NA coding upstream 174037 32008564 ~ 32009088 (+)
AMCG00009288 acsl3b,LOC107567703,LOC106568845,LOC107745612 coding upstream 184039 31968819 ~ 31999086 (+)
AMCG00009304 NA coding downstream 325165 32521518 ~ 32533407 (+)
AMCG00009305 gfm1 coding downstream 337524 32533877 ~ 32548495 (+)
AMCG00009306 NA coding downstream 357309 32553662 ~ 32564937 (+)
AMCG00009308 NA coding downstream 376586 32572939 ~ 32752465 (+)
AMCG00009311 NA coding downstream 563180 32759533 ~ 32760129 (+)
G56064 cul3,LOC100710156,LOC107384027 non-coding upstream 3866 32174307 ~ 32179259 (+)
G56062 NA non-coding upstream 15077 32166865 ~ 32168048 (+)
G56021 NA non-coding upstream 125643 32053787 ~ 32057482 (+)
G55929 NA non-coding upstream 630963 31548531 ~ 31552162 (+)
G55926 NA non-coding upstream 635893 31542621 ~ 31547232 (+)
G56120 NA non-coding downstream 351654 32548007 ~ 32553904 (+)
G56211 ppm1l,LOC108430727,LOC105935930 non-coding downstream 751784 32948137 ~ 32950966 (+)
G56261 NA non-coding downstream 910017 33106370 ~ 33106621 (+)
G56262 NA non-coding downstream 913386 33109739 ~ 33110019 (+)
G56268 NA non-coding downstream 1085184 33281537 ~ 33281764 (+)
G56060 NA other upstream 17760 32161760 ~ 32165365 (+)
G55591 NA other upstream 2187687 29995126 ~ 29995438 (+)
G55573 NA other upstream 2271561 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 3008394 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 3074898 29103608 ~ 29108227 (+)
G56368 NA other downstream 1804443 34000796 ~ 34031445 (+)
G56369 NA other downstream 1819317 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 2167066 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 3192561 35388914 ~ 35389327 (+)
AMCG00009404 NA other downstream 5097550 37293903 ~ 37297009 (+)

Expression


Co-expression Network