AMCG00009306



Basic Information


Item Value
gene id AMCG00009306
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 32553662 ~ 32564937 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00009306
ATGGCGGACGGGGAAGAGCGTAGGGGTCTTCTGGATGAAGATGAATCTGAGCCTGCAATTCCGTCCCTCCCTGGGTCCAGACATGACCCCGCTTCAAGGAGACCCATGTCCGCTATCACTGACCCGAGCACCCTGCTTCACAGAATTGTCGTGCTGGTCTTCATGTGCTTTTTAGGCTTCGGTGAGTCCAGTGCATGTTGGGATATGCAACTGAATACATCCAAGTTTATGCAGCTGTATGCTTGGTATTCCTGGCCAAATGTGATCCTCTGTTTTCTAGGAGGATTTTTGATTGATAGGGTCTTTGGAATAAGGCTGGGTACTGTTATCTTCAGTCTCTTTGTCTGTGGCGGACAGGTCATATTTGCAACTGGTGCTTTACTTAATATGTTTTGGTTGATGGAGTTTGGAAGATTTGTATTTGGaATTGGTGGGGAGTCCCTTGCAGTTGCCCAGAATACATACGCTGTCAGCTGGTTTAAAGGAAAGGAACTGAACTTAGTGTTTGGTCTTCAGCTTAGCATGGCTCGACTAGGCAGTACAGTTAACATGAACATCATGGGATGGATCTACTCGAGGATTCAAGGACTAGTAGGCTTCCCGGGTTACACAACGCTTGGCATCACACTGATGATAGgttcagcaacttgtattttttcattaatatgtGCATTGATCCTGGGCTTCCTGGACAAGAGAGCAGAGAGGATATTAAACAAAGAACAGGGGAAGACTGGTGAAGTTATAAAGCTGACAGATGTGAAAGATTTTTCACTTTCCCTTTGGctgattttcattatttgtgttgGTTATTATGTGGCAGTCTTTCCATTCATTGGTCTTGGGCAGGTTTTCTTCATTGAAAAATTCAACTTTTCTCCTGGAGAAGCTAGAGCAATTAACAGCATTGTGTACATCATCTCCGCCCCTGCATCCCCTGTTTTGGGATTTTTGGTGGACAGAACTGGAAAGAATATCATCTGGATGCTGTTTGCGGTTTTGTCCACTCTCGCTGCCCACATGATGCTTGCCTTCACGTTCTGGAACCCCTGGATAGCAATGAGCTTACTGGGAGTTTCCTATTCTCTTCTTGCTTGTGCCTTGTGGCCCATGGTGGCCTTTGTCGTTCCAGAACACCAGCTGGGGACGGCATATGGATTCATGCAGTCCATACAGAACTTAGGACTTGCTCTGATCTCCATTGCTGCTGGATCGATACTGGACAGCAGTGGCTACTTGTTTCTTGAAGTATTCTTCTGTGCCTGTGTCAGCTTGGCATTGATTGCAGTGGTGATGCTGTACTTGGTTGATTTTCTCAGAGGAGGAGAACTTAATTTATCAGCTTCAGCGAGAGGAAAACTTCAAAAGATTTCTGATGCTGAAGCAGAGAAGAGAGAGCAGCAACGTCAGCAGCAAGATGAGGATCTGTCCCGCCTGAAGCCCATGACCGCCTTCGGATTGAGGAACCGATACCTCTCCAGACTCGGAGCTCAGCTTCCGGAGCACTACTGTACCCACCTGTCTTCATTAGCACACAGAAGTGTCCTAAAATAAAAGCGTTTAGCTTGGTAACTTGTTCTACTGCTAAAGCCAAGACATTAGAGAAGATTAGAGAAGTCTTTATGCCTTCAGCACCTTAAAAGCAATTGGGGATTGAATTGGTGTAAGATCTGTATTCATCAGCTCTACATTTAAGGTACTTTTGATCCAAGATAAAATTTCACTTGATTATTTTCTCATGTTAATAAAGATATTGTggctatatatacatttttttttctctcctgggCTGTGAAAACATTAGTCTATTAAGTAAAGTTGCCTATAAAGACTAATGACTATAGCACTCACTATAGAAAGTGGATCACTTTTTTTAGTAGTCTGTTCACATTTTTGTAGGGGAGGGAGTTACAGTGCAATTATGCTTTGCTTTCTAAACTGATAATTTTAAGCTTAAAACTATTTGCACTGAAATGTACATAATCTGAAATTCTTTGATAGAAAtatgtacaatttatttattttgcagatacATATTTAAAGGTAAAGGTGGGAAACACTGATGTACAAAGACATTTTTGCCTCCTTTTGCCAAACGAGTGAAGTATGGAACTCATCGGGTATTGATATTCCTAATTTTACATATTGGTATGACCACTCATCTCATGGTCTTCTGTGAAGACTGGTAATGTGTGTTGATGATGATCCTGAAATGTGCCTTGAACAGACATACTGTATAATGCAGATCAATGTATTTGCAATGCACTGATCGTGGTGTCTGGAGATTTTGGAAGCAAGCGTTGAACAATCTAATTTTAAGATAAATTAACCAAATTGAGAATTTGTACAGGTTGTACTGTCCATTAAATAGTAAagcataaatacatgtattaaatgcTACACAAAATGCATGTGTGGTTCTGTTGATTTAATGTTGTCAAGTGTTAAATATACTTTCATTAACTTGTCctaaatctgtattttcagtTATTGTTACTGAAACAACATACTGAATATTATTCCTGTttttgtacagatttgtattgtCAAATATTTGCTAAAGAATTGTATAGTGTTGACAGGTATTGCTTTGTCCCCTGCTGTTGTGGTTCAAATGGTATATTCTGTGCTTACAATGTACTCCATTTAAACCTGGTTTTACCTATTTTTGCAGTATGATTTAGAAAGTTATAATTAGTTTCCTCACTGGTTTTGAAATCATTTTCAGACATAACTATTGTGAATATTTGCTCTTAATTCTGCACTTCAAATAAACTTTATTCATAATATGA

Function


GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00009306 True 2792 mRNA 0.40 16 32553662 32564937

Neighbor


gene id symbol gene type direction distance location
AMCG00009305 gfm1 coding upstream 5167 32533877 ~ 32548495 (+)
AMCG00009304 NA coding upstream 20255 32521518 ~ 32533407 (+)
AMCG00009298 NA coding upstream 357309 32183125 ~ 32196353 (+)
AMCG00009293 NA coding upstream 434466 32115478 ~ 32119196 (+)
AMCG00009289 NA coding upstream 486963 32060813 ~ 32066699 (+)
AMCG00009308 NA coding downstream 8002 32572939 ~ 32752465 (+)
AMCG00009311 NA coding downstream 194596 32759533 ~ 32760129 (+)
AMCG00009309 LOC106612913,LOC106580942,LOC103369651,LOC102193686 coding downstream 218194 32783131 ~ 32800441 (+)
AMCG00009312 NA coding downstream 282613 32847550 ~ 32847873 (+)
AMCG00009313 LOC107702994 coding downstream 342997 32907934 ~ 32923438 (+)
G56064 cul3,LOC100710156,LOC107384027 non-coding upstream 374403 32174307 ~ 32179259 (+)
G56062 NA non-coding upstream 385614 32166865 ~ 32168048 (+)
G56021 NA non-coding upstream 496180 32053787 ~ 32057482 (+)
G55929 NA non-coding upstream 1001500 31548531 ~ 31552162 (+)
G55926 NA non-coding upstream 1006430 31542621 ~ 31547232 (+)
G56211 ppm1l,LOC108430727,LOC105935930 non-coding downstream 383200 32948137 ~ 32950966 (+)
G56261 NA non-coding downstream 541433 33106370 ~ 33106621 (+)
G56262 NA non-coding downstream 544802 33109739 ~ 33110019 (+)
G56268 NA non-coding downstream 716600 33281537 ~ 33281764 (+)
G56282 NA non-coding downstream 891954 33456891 ~ 33457172 (+)
G56060 NA other upstream 388297 32161760 ~ 32165365 (+)
G55591 NA other upstream 2558224 29995126 ~ 29995438 (+)
G55573 NA other upstream 2642098 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 3378931 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 3445435 29103608 ~ 29108227 (+)
G56368 NA other downstream 1435859 34000796 ~ 34031445 (+)
G56369 NA other downstream 1450733 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 1798482 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 2823977 35388914 ~ 35389327 (+)
AMCG00009404 NA other downstream 4728966 37293903 ~ 37297009 (+)

Expression



Co-expression Network