AMCG00009307


Basic Information

Item Value
gene id AMCG00009307
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 32541621 ~ 32548462 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009307
TGAAAACAAGAATGACAAACAGATGGGGGGAAAAAGGTGCAGCTTAACCTCCAGAAGTGCGAGACCaaggtttgtttaaaatgaaaggaaagaaaggagagaaagaaaaaaaacaaaaaagctgatCTGGAGAGTGTCACTTACCCTTATCAACGCTGGGAGGAATCTGATGGTCTGACGTACGCGGAGAGAGGGTATAACTGGAACGTTTCTGAAGGTCTCTAATCCTCATTCCAAACAAACATGGGCCGGGCACTGTGGATCGCTCTGGCCGTACTTCCAGTGGTTTATGGCCACCCTACACTTCTAACTGTCCAGACAGAGCTACAAAccgaagagagagacagagatccCCCTCACCTTCAAAGCGAGTCTCCCAACAGTGTTATATACAAAGAAGATGATGGCAAAGAGTTCTTCCTTGAGatAAGTCAAGATGACACAGAGAACAAACTGCCAACACCAGCCTCAGATGTGGAGTCCAACCAGGTGAATACAGCCATGCCTGTGGTGGAGCTCAATCCATCCTACTACCAAGCCCGCCGGGCGGCCAAAGCGGCAGAGCATTACCTGAATTACCATTACGGGTCCCCGTTCAAACTCTTTAGCATTCGGGACATTAAAAGCGCCACTTTAGAGGAACTTCCTGAGGGGCGTGGAAAATACAACATGACATTTGCAGTGGATGACGCAATTAGCAATAAAACTGCAGGAATCTGCACGGCGGAAATAGTTTTCAACAGAACAGAGGAGGAAAAAACGCCAGAAGTTCATTGCACTTGCGATGACCTCCTTAAAGTAAACACATCTGAAGCAGAGAACAGTTTCTTCCACCAAGTCATGCAGAGCACTAAGCTTGTGGAAGGGGAGTACATTCCAGaCAGCTTTGGCTTTATTGCTCCGGAAATGAAGCCCTGGTGGCAGTTGGGGATTCTGGCCTCCAGCTTTGTAATGTTGAAGGAGAGTAATGAAAGTACACTGTACAATATGGCCCAAATACTCAGTGTCAAACAGCAGAAGTCAGAAGAAAACAGCCTACTGGTTGATTATGATGTCCTCCTGCATGACTTTATATCACAgGAAATGATCCAGTGGCACATCCAGGCTTCCTGGAGTCCAACAACAGGAGTAAAAGTGACAAAGTGCACCTtgcaaccaaaaaaacactCGACCACCCCTGCCACCGTGGACAGCCGTTAATGCATCCCGCAGTGTAATCTAATGTAATTAATGCTGTACTggttaacatttaaataaccaGGCAGCGGATCGCAATCATGTCCCgataatgcatttataattacaattatctggtaaattaatttgtccagagcagaaaatgaataaagcaaTGATATTTGTATAAACCTATGTGGGAGTGAATGTGCACAACAATTATCCTTTAACCTGCTTATCACATTTGGGTATGAATTCCAAGGAACACTGTAACTGGCAATAGTAGTGCAGCAAGAAGAAGAATTATTAGTGTGGGGGAGCAGGTGGGTGATTGAAATCCCTATTATACAGCAAGACGAACGGCAGCATATACAACTTTTCACTCCGTTTTCTTTTGCCGTCATATAatcaatgtgttattttgtaaagCTGAGGGACGTTTGCAATATATTTGTACTAtagagataaaaaaataaaaaaataaagacatttggaAGTCATACTCTAATGGCCTGCAAGGAAGTTAAAATTGATTGTGTTGCAGCTATATGGGGcgaatttttaataaat

Function

GO: NA

KEGG:

id description
K23594 LXN; latexin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009307 True 1746 mRNA 0.43 8 32541621 32548462

Neighbor

gene id symbol gene type direction distance location
AMCG00009302 shox2,LOC107703017 coding downstream 141914 32393705 ~ 32399707 (-)
AMCG00009301 NA coding downstream 271167 32220724 ~ 32270454 (-)
AMCG00009303 NA coding downstream 341126 32197225 ~ 32200495 (-)
AMCG00009299 cul3,LOC104924156,LOC100710156,LOC107099750,LOC106580681 coding downstream 361958 32155100 ~ 32179663 (-)
AMCG00009300 NA coding downstream 400297 32139368 ~ 32141324 (-)
AMCG00009310 NA coding upstream 260472 32808934 ~ 32830294 (-)
AMCG00009315 NA coding upstream 303736 32852198 ~ 32873274 (-)
AMCG00009316 ift80 coding upstream 346787 32895249 ~ 32903560 (-)
AMCG00009314 kpna4,LOC107750083 coding upstream 379806 32928268 ~ 32939975 (-)
AMCG00009321 ppm1l,LOC107722109,LOC107681725,LOC107560765 coding upstream 402154 32950616 ~ 32958237 (-)
G56012 NA non-coding downstream 509651 31998077 ~ 32031970 (-)
G55991 NA non-coding downstream 590948 31950422 ~ 31950673 (-)
G55975 NA non-coding downstream 626248 31915168 ~ 31915373 (-)
G55861 NA non-coding downstream 1725530 30809576 ~ 30816091 (-)
G55760 NA non-coding downstream 1886600 30652912 ~ 30655021 (-)
G56163 NA non-coding upstream 252073 32800535 ~ 32800895 (-)
G56185 NA non-coding upstream 295633 32844095 ~ 32844336 (-)
G56256 sptssb non-coding upstream 484515 33032977 ~ 33038239 (-)
G56259 NA non-coding upstream 547535 33095997 ~ 33096230 (-)
G56260 NA non-coding upstream 548122 33096584 ~ 33096850 (-)
AMCG00009275 NA other downstream 1356655 31150912 ~ 31184966 (-)
AMCG00009269 NA other downstream 1555626 30972953 ~ 30985995 (-)
G55881 NA other downstream 1594410 30944367 ~ 30947211 (-)
G55878 NA other downstream 1604370 30934564 ~ 30937251 (-)
AMCG00009265 NA other downstream 1884009 30599474 ~ 30657612 (-)
AMCG00009332 NA other upstream 1459141 34007603 ~ 34026160 (-)
AMCG00009333 NA other upstream 1493614 34042076 ~ 34050737 (-)
AMCG00009342 kcnab1 other upstream 1678812 34227274 ~ 34274084 (-)
G56438 kcnab1a,kcnab1,LOC107671078,LOC107675612,LOC107566585,LOC108263953 other upstream 1691022 34239484 ~ 34316008 (-)
AMCG00009347 gmps other upstream 1785799 34334261 ~ 34362341 (-)

Expression


Co-expression Network