AMCG00009315


Basic Information

Item Value
gene id AMCG00009315
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 32852198 ~ 32873274 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009315
tGGTCGTATGCATTGGAAAAGCCAAACACTGGAAGCATTTTCAGCATTGCCTGGTCAGTGGATGGGACTCAAGTAGCTGGCGCCTGTGGGAATGGACACGTGATTTTTGCCCATGTAATCGAGCAGAGATGGGAGTGGAAAAACTTTGAGATAACACTCACAAAAAGAAGGACCATGCAGGTGCGCAATGTGCAGAATGACGCACTGGATGTTTTGGAGTTCCGGGACCGTGTGATAAAAGCTTCCTTGTCCCATGGGCATTTGGTAGTGACAACATCCCTGCAGTGTTATGTGTACAGTGCGAAGAATTGGAACACACCATTGATTTTCGATCTCAAAGAGGGAACTGTTAGCTTGATCCTGCAAGCAGAAAgACATTTTCTGCTTGTGGATGGAGCAGGTATCTATTTGTTTTCCTATGAGGGACGTCTTATTTCTACTCCAAAGTTCCCAGGAATGCGGACTGACATTCTGAATGCACAAACTATCTCTCTTAGTAATGATACCATTGCAATAAGAGACAAAGCTGATGAGAAAGTTATCTTTCTAATTGATGCTCTGTCTGGAAAACCACTCGGAGATGGCAAACCCCTGATGCACAAGATGGAGGTGGTGGAAGTTGCCCTGGACCAGTGTGGAACAGCCAATGAACGAAAGATTGCACTGATCGATAAGAATCGGGATCTGTACCTGACCCCTGTCAGAAGATTTGGACGGGAgccaaaaatgaataaaattgGTACTATGGTTCATACCTTGGCCTGGAATGACACTGCAAATATTCTGTGTGGGATACAAGATACTAATTTCACTGTATGGAATTACCCAAACACTGTGTTTGTGGATAAAGAACTCCTGcccaaaacaatatatatgaaaGATGCAAGCGAATTTAGCAGAAATCCCCAGATTTTAAACTATGTAGGTAATCAGGTTACAATCAGGAGAGCTGATGGCTCTTTGGTGTACAGCACTGTATCTCCTTACCCTGCCATCCTGCACGACTACGTCACTACCTCCCGCTGGGATGATGCTGTCAGACTGTGTCGCTTTGCAAAGGATGAAGAATTATGGGCTTGTCTTGCTGCTATGGCAATTGCAATGGGAATGTGCAAGAAGCAGAAGGAGTCCTTCTTCAAGCTGGTCTCATATACCAAGCAATTCAGCTTGAGCTTCTTTTCCATTCCTAGGGCACTGGAACTGGCAGTAAAACACAAGACACATGTTGACACAGTTCTGGCTTACAGGCAGAAATATTTGGATGATTTTGGcaaaaaagaaaccaacaaaaGGTTTTTGCAGTATTCGGAAGGAGTGGAGGTTGACTGGGAAAAGATACAAGCTAAAATTGAGATGGAGATTGCCAAAGAGCGAGAAAAAGCAGCTACATCCTCTGCAGTGAGAAGCAGCATTTCCTCAAGGCGGTGA

Function

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0060026 convergent extension biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0008104 protein localization biological_process

KEGG:

id description
K19678 IFT80; intraflagellar transport protein 80

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009315 True 1428 mRNA 0.44 12 32852198 32873274

Neighbor

gene id symbol gene type direction distance location
AMCG00009310 NA coding downstream 21904 32808934 ~ 32830294 (-)
AMCG00009307 NA coding downstream 303736 32541621 ~ 32548462 (-)
AMCG00009302 shox2,LOC107703017 coding downstream 452491 32393705 ~ 32399707 (-)
AMCG00009301 NA coding downstream 581744 32220724 ~ 32270454 (-)
AMCG00009303 NA coding downstream 651703 32197225 ~ 32200495 (-)
AMCG00009316 ift80 coding upstream 21975 32895249 ~ 32903560 (-)
AMCG00009314 kpna4,LOC107750083 coding upstream 54994 32928268 ~ 32939975 (-)
AMCG00009321 ppm1l,LOC107722109,LOC107681725,LOC107560765 coding upstream 77342 32950616 ~ 32958237 (-)
AMCG00009322 ppm1l,LOC106580962,LOC101065476 coding upstream 128154 33001428 ~ 33004290 (-)
AMCG00009326 NA coding upstream 1028861 33902135 ~ 33935311 (-)
G56185 NA non-coding downstream 7862 32844095 ~ 32844336 (-)
G56163 NA non-coding downstream 51303 32800535 ~ 32800895 (-)
G56012 NA non-coding downstream 820228 31998077 ~ 32031970 (-)
G55991 NA non-coding downstream 901525 31950422 ~ 31950673 (-)
G55975 NA non-coding downstream 936825 31915168 ~ 31915373 (-)
G56256 sptssb non-coding upstream 159703 33032977 ~ 33038239 (-)
G56259 NA non-coding upstream 222723 33095997 ~ 33096230 (-)
G56260 NA non-coding upstream 223310 33096584 ~ 33096850 (-)
G56265 NA non-coding upstream 270582 33143856 ~ 33144122 (-)
G56401 NA non-coding upstream 1250332 34123606 ~ 34124979 (-)
AMCG00009275 NA other downstream 1667232 31150912 ~ 31184966 (-)
AMCG00009269 NA other downstream 1866203 30972953 ~ 30985995 (-)
G55881 NA other downstream 1904987 30944367 ~ 30947211 (-)
G55878 NA other downstream 1914947 30934564 ~ 30937251 (-)
AMCG00009265 NA other downstream 2194586 30599474 ~ 30657612 (-)
AMCG00009332 NA other upstream 1134329 34007603 ~ 34026160 (-)
AMCG00009333 NA other upstream 1168802 34042076 ~ 34050737 (-)
AMCG00009342 kcnab1 other upstream 1354000 34227274 ~ 34274084 (-)
G56438 kcnab1a,kcnab1,LOC107671078,LOC107675612,LOC107566585,LOC108263953 other upstream 1366210 34239484 ~ 34316008 (-)
AMCG00009347 gmps other upstream 1460987 34334261 ~ 34362341 (-)

Expression


Co-expression Network