Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00009316 |
| gene name | ift80 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030126.1 |
| NCBI id | CM030126.1 |
| chromosome length | 46242406 |
| location | 32895249 ~ 32903560 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| ift80 | Acts upstream of or within several processes, including cilium assembly; convergent extension; and retina morphogenesis in camera-type eye. Predicted to be located in motile cilium. Predicted to be part of intraciliary transport particle B. Predicted to be active in centrosome and cilium. Is expressed in several structures, including eye; notochord; pectoral fin; pectoral fin bud; and pronephric duct. Used to study asphyxiating thoracic dystrophy; asphyxiating thoracic dystrophy 2; and ciliopathy. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy 2. Orthologous to human IFT80 (intraflagellar transport 80). |
| description |
|---|
| PREDICTED: intraflagellar transport protein 80 homolog |
| id | description |
|---|---|
| K19678 | IFT80; intraflagellar transport protein 80 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00009316 | True | 729 | mRNA | 0.45 | 6 | 32895249 | 32903560 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00009315 | NA | coding | downstream | 21975 | 32852198 ~ 32873274 (-) |
| AMCG00009310 | NA | coding | downstream | 64955 | 32808934 ~ 32830294 (-) |
| AMCG00009307 | NA | coding | downstream | 346787 | 32541621 ~ 32548462 (-) |
| AMCG00009302 | shox2,LOC107703017 | coding | downstream | 495542 | 32393705 ~ 32399707 (-) |
| AMCG00009301 | NA | coding | downstream | 624795 | 32220724 ~ 32270454 (-) |
| AMCG00009314 | kpna4,LOC107750083 | coding | upstream | 24708 | 32928268 ~ 32939975 (-) |
| AMCG00009321 | ppm1l,LOC107722109,LOC107681725,LOC107560765 | coding | upstream | 47056 | 32950616 ~ 32958237 (-) |
| AMCG00009322 | ppm1l,LOC106580962,LOC101065476 | coding | upstream | 97868 | 33001428 ~ 33004290 (-) |
| AMCG00009326 | NA | coding | upstream | 998575 | 33902135 ~ 33935311 (-) |
| AMCG00009328 | NA | coding | upstream | 1040689 | 33944249 ~ 33948166 (-) |
| G56185 | NA | non-coding | downstream | 50913 | 32844095 ~ 32844336 (-) |
| G56163 | NA | non-coding | downstream | 94354 | 32800535 ~ 32800895 (-) |
| G56012 | NA | non-coding | downstream | 863279 | 31998077 ~ 32031970 (-) |
| G55991 | NA | non-coding | downstream | 944576 | 31950422 ~ 31950673 (-) |
| G55975 | NA | non-coding | downstream | 979876 | 31915168 ~ 31915373 (-) |
| G56256 | sptssb | non-coding | upstream | 129417 | 33032977 ~ 33038239 (-) |
| G56259 | NA | non-coding | upstream | 192437 | 33095997 ~ 33096230 (-) |
| G56260 | NA | non-coding | upstream | 193024 | 33096584 ~ 33096850 (-) |
| G56265 | NA | non-coding | upstream | 240296 | 33143856 ~ 33144122 (-) |
| G56401 | NA | non-coding | upstream | 1220046 | 34123606 ~ 34124979 (-) |
| AMCG00009275 | NA | other | downstream | 1710283 | 31150912 ~ 31184966 (-) |
| AMCG00009269 | NA | other | downstream | 1909254 | 30972953 ~ 30985995 (-) |
| G55881 | NA | other | downstream | 1948038 | 30944367 ~ 30947211 (-) |
| G55878 | NA | other | downstream | 1957998 | 30934564 ~ 30937251 (-) |
| AMCG00009265 | NA | other | downstream | 2237637 | 30599474 ~ 30657612 (-) |
| AMCG00009332 | NA | other | upstream | 1104043 | 34007603 ~ 34026160 (-) |
| AMCG00009333 | NA | other | upstream | 1138516 | 34042076 ~ 34050737 (-) |
| AMCG00009342 | kcnab1 | other | upstream | 1323714 | 34227274 ~ 34274084 (-) |
| G56438 | kcnab1a,kcnab1,LOC107671078,LOC107675612,LOC107566585,LOC108263953 | other | upstream | 1335924 | 34239484 ~ 34316008 (-) |
| AMCG00009347 | gmps | other | upstream | 1430701 | 34334261 ~ 34362341 (-) |
