AMCG00009325


Basic Information

Item Value
gene id AMCG00009325
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 33951147 ~ 33969816 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009325
CTTTCTCAACACTGCTCTTAAAACAGAAGTTGCCTCCACCACATACTACTGGATACTGATTTCAACACAGGATTTTGCCAGAAACTAAACTTGCACCGAAACGAGCTACCCTGCAACCTTAAAGATTTCTTTGGGTATGATAATGTTCAGTCGCTTATAGGTGCTGAGCAAGGACAAACTAGGAACCCTCATTGCTGTCAAAATGGATCCCAGTGAAATGAAGAGCGAGACAGAGCTGCTGGAAAACAGACTAAGCAAGAAGGATTTTGCAAAAATGCAAACCCTTTTCTTGttacCAGAGGTAAAGCAGCCAGTATCCATGATGAAAGAAGAGTTTGTAGATAAGGTCTCTTCACTTGTTGGCCGAGGCACAAAGGATGAGTATGGAGAGCTGTTTGACAAGGTAGACGTGACACGAGAAGGGTTTGTCGACTGGGACAAGCTGACGTCTTTTCTGCTCTTAGAGCTCAACGAGAAAGATGAGCATTCTAAGAGCACTGTGGTTCCTCAATGGAAACCCCTTAAAGTTCTCCCAATGTCACACAAGGAACCTATCCAGTCAATTGTGTACTTGAGGAATACCAACAGATATCTTAGCATCAGTAAGGAGGGGCAGCTGGGAATTTGGGCGGATGGCTTTACCCTGCAGAAAACAATCCGCATTGTCACAGATTCTGTCAAACTCAAAGACCTTTGGGTTACAAGTTTGGTGCTGTTGCCAAATGTGAACAAGATTGCTGTTGGATTTACCAGCAAGGAAATTTGCTTTTATGACCTGCTATCTAAGCAGGAGTTCTCCTGCCAGTATAAAATCCTGGACCTTGAGCACACACCACTAAGTATGGACTACTGGTACAATCCCACTGATGCAGATGAAGCTGTCCTCAGCTTTGGGGACCTTGGTGGAGAGgtcAATGGAATGTGTTTTACAACTGCGCTAATAGCGTTGTTTGAGAGACCCACCACCACAGTAGAGCAGGACTCTGTTATAACCATTAAATGGCAGGAGCTTGTCAATGGCAATCACAAGTGTTGCTATGTTGTGAGACACAAGGGTCATGGAAAGAGCTGGGTTCGACGAGTGCGATACCTTGGCAATCTGGACGCTTTTATCTCTTGCGCCACCAGCAATGTCAACAGCATAGTACTGGCTTGGAAGGAGAAGGAAAGAATGCCACTACGGACCACTGCCATCCACATCGGCAAAGGAACCAACGACTTTGACTATCACCCTGGCCTGAATTTAATTGCATCTGCTGGCATTGACAACAAAGTGTGTCTCTGGAACCCTTACGTGATTTCCAAGCCAGTGGGGGTTCTGCGCGGTCACATGGCCAGTGTCATTGCAGTTCAGTTCATCTTCCACATGGTCCTATACTTCGACGAAGAGCACGGCAGGCTTTTGACTACCTTTAACAACCAGATCACACTGCTGGAAGCGAAACAGGAGATTGGACAGAGAGTGACAAGCCATGCAAAAGTGGTCAGCTGTGTGCTTTACAATCAGCTTTTCAAGCAGgtaattaGCTCTGATGCTGATTCCACCATTATATACTGGATGATTGATACAGGACAGAAGATTAAGCAGTTCACCAAGTGCCACGGTGATGCTGAGATCTCCACAATGGCCCTTGACGCTACCGAAACCAGGCTCTTCACTGGAGGCACTGATGGGACTGTCAAGgtttGGGATTTCAATGGACATTGTTACCATAAACTTAATGCCGTGTTCCGGATGAACAGCTTCACGCAGTTTTTCGTGCAGCCCTCAGAATGGAAGGGAGGAGTGCAGCACCAGAACGACATCCTCTGCGCAGCCATCCTCCCCCCGCAGACCTTGGCCACCGGTAGTTACGATGGCGAAATAATTATATGGAACAACAACACTGAAAATGCTCGTTACAAACTTCATCCGGACGGCACGGGTACACTGAAATCGAAGTCAGACAGTGAGCTGTTAAAGGAAAGGAAGACCTCCATTCCACCTCGGACCTCCTCTGCTTCCTCAGGAAAATTCTCCCCTTCTGTTGTGTTTAGTGAAAGTGATGCCGAATGTAACTACACTGTTACGAGACTCATCTTTTTGGAAGCTAGAAAAAGCCTTGCTGCTGGAGACGCTGCAGACCTGGTGTCGTGTGGAGGGCTGGGATTGGTGAGATTCTGGAGCACCACGAGAATCTGCCTGGGCGCAGAATTCATTGCTCACAGGGACGCCGGCTCCATCATCATGACTGTGGATAAAACGGGCCAATACCTCATCACCGGGGACATTGATGGATGGGTAAAAGTTTGGGATATACAGGAGTATTGCCTTCATTGCACTGATAGTGTGATCAATCAGCCTCCTGCTCTGCTGACAACCTTTCAGCCCCATGTGGACTGTGTCACTCACCTTGAAACATGTGTACACAATGGACAATTACTCCTCACCTCTGCATCTGCTGACTGCAGTGTGGCACTTAGCCACATCTCCGGGTCGATTGTAGGAATATTTGGACAGGAAGAACACTGGCGCATAAATGATATCATTGGTGAGGCTGGCGTGTGGAACTCACAGCTGACAGGATACAGGGAACAGAGCCCAGAGGAAGACTCGCATTCAGTCACCACTCCTGAGGAGATATCAGCTGGAAAGAATTCCCCAAAGCTCGCACAGGACCTTCCAGAGCAAGCTAGGGATAGTGACCTGGAAATAATGGGGCAGCCCACCCTAACCAACCCATGGCAAAACACCATTCTATGGAAAAGATACCaagaaagtaaaaaagaaatTGACCACAAACCTGCAGCATGGAAGGAGTCACAAAGTTCAATTGGTACTTTCAGTTGGCTGCACATTGAAGACCTCAGCAGTGTCTATGAGCTGGAGAAGCCAGATTTTGTCACAAATCCTCACAGATACTTTGGGGAGAAGCCTGAGAAAAAATCTCCCGATCCCCCAGAGATCCATGTCATTTCTGAAACTGTGAAAGCTGCCTTTGATGAGAAGAGTTTATTTCCCAGGGATATCCTGCAAAGTGAACATAAAGCAAGGAGATCACACAGACAGCATGGGTCTCGACTCTGTCAGAAGCCAGGCCACACACAGAGCAGaaaacCCAAAGCAAGTTCTTCAGCAGTTTTCAGACCTTGAAGTCAAGTGATGGAGTACACACGCACAGCTGGATAATTAATCAAAGGCAAAGCGCTCCAGCTGAGGAGGGGGGTTTAAAGAACAAGGAACCATTTGGAAATGAACCTGAGTGTGTTTAAAATTCTCATTAACTGCAAGTTTCTCGAATTAGAAAGACCTTTAAAATCCATAAGGTACCTTCAGAAATACTTGACATTATCATTactagtagtattagtagtagtatatttatTACTCTGAACACAAGCTAGACAGCCCTGGAAATTCACATGCACCTATGTATataactataaaaaataaaacaaaatgtctattttatcctgatttgttttcatgccGGAAAGAACTGTACAGCTTTCAATAGAGATAATCTGTGAGGAACTGTGATTCACAGCTGGTTGTATGCTTTTGTATgacagtttatttgtattcaatgcATCCTGTAATAATGTGATGTACAGTTCAGAGGTCTGGCATACAAGTCTGAACTGTAGAGTTACTTCTTTCACTTTCAACAACATCAGGCTATCCTTATAGTCTGTAGAATTGAGTCCCATTTGAGACTCGGTTGTCTGCTGATGGTCTTATACTCATTTCCCAGGACTCCTACAAAAGTAGAATCTTTAAAAGGTTATGTCTGAGGAAGTATCACTCAATTTATGTACAAAATTTAACTCTAACCAGTAATGAGGTCttagttgttgttgtgttcAATTTCCAAATAGTTGTTGTGCTACATATTACTGGTGTATTTTGCAGcacttgattaaaataaatcgaTCAAGATTAATACACTGTTACTGATATTCAGCTCTTCATTGCATAGACGGTAAATGAGCGCTGCAGTGTAACCCAATCTTAAACTGAGATAATTTATAACCGAAGGGTTTGCCGCttacaagcaatacaaaaaccTCCTCCCTGCACTAATGAAACTCTTCAGCTaagtatgtttttcattaccaCAGGTGATGATCTCTGAAAGTGTAACCGATCTTATTAACATTGCTTGCCTGGTTATAAGTTCCCATCCCTGATGTTAATGAAGTGGCTGAGGTCTGCGCTGGTGCAGCCATGGTTAACCGCCACTCTCTTTACTGTCTCGTAAAGATTAATGCAGATTCTTCATTCAGTGTTTGCAAGTTTTAAGTAAACTTGGACAGCTGTCatgctatataaaaaaaacattatttccaaTTCATGGCGAAGGAAGCAATGCTGAGATTTTGGGGAACTGCCAGCTGGAGAAAACGAATGGccaaatttaattaaagaaacccTTCTATTACTCTGAATAAGGGTTTCAGCTCCTTTAGAGGCAAATTTGCTTTTCCAACTGACAGGTTTACAGGAATGCTACTAGTTGAGGAAGGAGCCCTTGTGTTATTGATAGGCCTCaaccaacattttaatttaactccAGCTACAGAAGAGTTCGATTACACGGCGGAAAAGTGAAATCATTCTTTTCCTCAATTTTTGAGGTCACAAGAAAATCATGTTTGAAACTAAACCCCTTACTTTGGAGTTTTAATAGAATCTAAAATtagaagaataaaaatacaccaTAATCTATCATGTGTTATTCTAATTGGACTTAATGAATTGAAACCGCCTTAATGGtaaatttgtaatttatgaaaaaataagcaGTAACTATTAATAAAC

Function

GO: NA

KEGG:

id description
K24747 WDR49; WD repeat-containing protein 49

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009325 True 4801 mRNA 0.43 20 33951147 33969816

Neighbor

gene id symbol gene type direction distance location
AMCG00009328 NA coding downstream 2981 33944249 ~ 33948166 (-)
AMCG00009326 NA coding downstream 15836 33902135 ~ 33935311 (-)
AMCG00009322 ppm1l,LOC106580962,LOC101065476 coding downstream 946857 33001428 ~ 33004290 (-)
AMCG00009321 ppm1l,LOC107722109,LOC107681725,LOC107560765 coding downstream 992910 32950616 ~ 32958237 (-)
AMCG00009314 kpna4,LOC107750083 coding downstream 1011172 32928268 ~ 32939975 (-)
AMCG00009327 NA coding upstream 1025 33970841 ~ 33976806 (-)
AMCG00009331 NA coding upstream 102020 34071836 ~ 34076094 (-)
AMCG00009339 NA coding upstream 170290 34140106 ~ 34169068 (-)
AMCG00009340 tiparp coding upstream 228399 34198215 ~ 34212174 (-)
AMCG00009341 NA coding upstream 250249 34220065 ~ 34221427 (-)
G56265 NA non-coding downstream 807025 33143856 ~ 33144122 (-)
G56260 NA non-coding downstream 854297 33096584 ~ 33096850 (-)
G56259 NA non-coding downstream 854917 33095997 ~ 33096230 (-)
G56256 sptssb non-coding downstream 912908 33032977 ~ 33038239 (-)
G56185 NA non-coding downstream 1106811 32844095 ~ 32844336 (-)
G56401 NA non-coding upstream 153790 34123606 ~ 34124979 (-)
G56513 NA non-coding upstream 1190775 35160591 ~ 35160877 (-)
G56515 LOC103376870 non-coding upstream 1203060 35172876 ~ 35173249 (-)
G56522 NA non-coding upstream 1378628 35348444 ~ 35348927 (-)
G56532 NA non-coding upstream 1388524 35358340 ~ 35358650 (-)
AMCG00009275 NA other downstream 2766181 31150912 ~ 31184966 (-)
AMCG00009269 NA other downstream 2965152 30972953 ~ 30985995 (-)
G55881 NA other downstream 3003936 30944367 ~ 30947211 (-)
G55878 NA other downstream 3013896 30934564 ~ 30937251 (-)
AMCG00009265 NA other downstream 3293535 30599474 ~ 30657612 (-)
AMCG00009332 NA other upstream 37787 34007603 ~ 34026160 (-)
AMCG00009333 NA other upstream 72260 34042076 ~ 34050737 (-)
AMCG00009342 kcnab1 other upstream 257458 34227274 ~ 34274084 (-)
G56438 kcnab1a,kcnab1,LOC107671078,LOC107675612,LOC107566585,LOC108263953 other upstream 269668 34239484 ~ 34316008 (-)
AMCG00009347 gmps other upstream 364445 34334261 ~ 34362341 (-)

Expression


Co-expression Network