AMCG00009334 (veph1,LOC106581439)


Basic Information

Item Value
gene id AMCG00009334
gene name veph1,LOC106581439
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34063564 ~ 34068571 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009334
ATGCATCACCTTTTCAGTCTAGTTCTCGGGCAAAGAGACCTGTCGCGCGCTGGAGACCTCTTTTCCCTCGAAGACGCTGAGATTGAGGAGTGCCTTTCAGAAGCCCTTGAAGAAATTAAAGCTATATCCTGCTCCCCAGACTACTTGACTAATGACAACGATCAGGCTGTGGTGGAGATCTGCATTACTCGGATTACGACTGCCATCAGGGAGACGCATTCCATCGAGAGGCATGGAAAAGCTCTCGTTTCGCTGTGGGAGTCGTGCCTGGAGTACAACCTGAAACCGGAAGGAAAGGATGAAGACACCCCGCATGCAAAAATAGCCTCTGACATCATGAGCTGCATCTTGCAGAACTATAACCGCCCTTCAGTGATGGCCCTTGCGGTGCCTGTGGCTGTGAAGTTTCTCCTGCGAGGGAACAGGGAGCTGTGCAGGAACATGTCCAGTTATCTGTCTTTGGCAGCCATTGCGAAAGCCGACTTACTGGCTGAGCACACAGAAGCCATCACAAAGAGCGTGCTGCAA

Function

symbol description
veph1 Predicted to enable phosphatidylinositol-5-phosphate binding activity. Acts upstream of or within brain development and ear morphogenesis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in brain; hindbrain; midbrain; otic vesicle; and ventricular zone. Orthologous to human VEPH1 (ventricular zone expressed PH domain containing 1).

NR:

description
PREDICTED: ventricular zone-expressed PH domain-containing protein homolog 1

GO:

id name namespace
GO:0042471 ear morphogenesis biological_process
GO:0007420 brain development biological_process
GO:0005886 plasma membrane cellular_component

KEGG:

id description
K24027 MELT; protein melted

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009334 True 528 mRNA 0.52 3 34063564 34068571

Neighbor

gene id symbol gene type direction distance location
AMCG00009330 NA coding upstream 57917 34001523 ~ 34005647 (+)
AMCG00009329 NA coding upstream 62491 33991608 ~ 34001073 (+)
AMCG00009324 NA coding upstream 485965 33534374 ~ 33577599 (+)
AMCG00009323 slitrk3,LOC107570382,LOC107705787,LOC107600237 coding upstream 542579 33515937 ~ 33520985 (+)
AMCG00009320 NA coding upstream 612294 33437686 ~ 33451270 (+)
AMCG00009337 NA coding downstream 11923 34080494 ~ 34090966 (+)
AMCG00009338 LOC107692013,LOC106581445 coding downstream 24155 34092726 ~ 34108014 (+)
AMCG00009336 NA coding downstream 50515 34119086 ~ 34121611 (+)
AMCG00009335 ccnl1 coding downstream 56458 34125029 ~ 34133695 (+)
AMCG00009343 NA coding downstream 152001 34220572 ~ 34254089 (+)
G56376 NA non-coding upstream 21305 34038134 ~ 34042259 (+)
G56282 NA non-coding upstream 606392 33456891 ~ 33457172 (+)
G56268 NA non-coding upstream 781800 33281537 ~ 33281764 (+)
G56262 NA non-coding upstream 953545 33109739 ~ 33110019 (+)
G56261 NA non-coding upstream 956943 33106370 ~ 33106621 (+)
G56474 NA non-coding downstream 514376 34582947 ~ 34662345 (+)
G56495 NA non-coding downstream 894183 34962754 ~ 34963224 (+)
G56501 NA non-coding downstream 951663 35020234 ~ 35067229 (+)
G56541 LOC103376870 non-coding downstream 1470316 35538887 ~ 35539807 (+)
G56542 NA non-coding downstream 1506475 35575046 ~ 35576926 (+)
G56368 NA other upstream 32119 34000796 ~ 34031445 (+)
G56369 NA other upstream 44749 34015670 ~ 34018815 (+)
G56060 NA other upstream 1898199 32161760 ~ 32165365 (+)
G55591 NA other upstream 4068126 29995126 ~ 29995438 (+)
G55573 NA other upstream 4152000 29907911 ~ 29911564 (+)
AMCG00009345 NA other downstream 294848 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 1320343 35388914 ~ 35389327 (+)
AMCG00009404 NA other downstream 3225332 37293903 ~ 37297009 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other downstream 3279537 37348108 ~ 37367671 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other downstream 3353446 37422017 ~ 37463505 (+)

Expression


Co-expression Network